miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26788 3' -59.6 NC_005808.1 + 41988 0.74 0.138268
Target:  5'- uCCAcgGCGCugcuGGCCGACCCGCagGCGg -3'
miRNA:   3'- -GGUagUGCGc---UCGGCUGGGCGagCGC- -5'
26788 3' -59.6 NC_005808.1 + 33809 0.67 0.414894
Target:  5'- aCCG--GCGCG-GCCGACCCaucgugcGC-CGCGu -3'
miRNA:   3'- -GGUagUGCGCuCGGCUGGG-------CGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 36206 0.66 0.434385
Target:  5'- aCUA-CAC-CGGGCCGGCCgGCcUGCGc -3'
miRNA:   3'- -GGUaGUGcGCUCGGCUGGgCGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 33757 0.66 0.472926
Target:  5'- gCCA--ACGC--GCUGGCCCGCgUUGCGg -3'
miRNA:   3'- -GGUagUGCGcuCGGCUGGGCG-AGCGC- -5'
26788 3' -59.6 NC_005808.1 + 23492 0.72 0.178759
Target:  5'- aCCAUCuacccgaaggguuCGCaGGCCGGCCUGCaaUCGCGu -3'
miRNA:   3'- -GGUAGu------------GCGcUCGGCUGGGCG--AGCGC- -5'
26788 3' -59.6 NC_005808.1 + 18678 0.71 0.216283
Target:  5'- aCCAUCACGCcuauGCCGGCauggaagCCGCgggCGUGg -3'
miRNA:   3'- -GGUAGUGCGcu--CGGCUG-------GGCGa--GCGC- -5'
26788 3' -59.6 NC_005808.1 + 40357 0.7 0.252636
Target:  5'- uUCAUUGCGCGGccacgcGCCG-CCUGCUgCGCGu -3'
miRNA:   3'- -GGUAGUGCGCU------CGGCuGGGCGA-GCGC- -5'
26788 3' -59.6 NC_005808.1 + 14363 0.7 0.27229
Target:  5'- ---cCugGCGcAGuCCGACCCGCgCGUGg -3'
miRNA:   3'- gguaGugCGC-UC-GGCUGGGCGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 5349 0.67 0.380161
Target:  5'- gCAUCGCGCugcguGGCCG-CCUGCacCGCGc -3'
miRNA:   3'- gGUAGUGCGc----UCGGCuGGGCGa-GCGC- -5'
26788 3' -59.6 NC_005808.1 + 20523 0.67 0.41398
Target:  5'- gCCAUCGagcCGCGcGCCGACCgCGacccgagcaagCGCGa -3'
miRNA:   3'- -GGUAGU---GCGCuCGGCUGG-GCga---------GCGC- -5'
26788 3' -59.6 NC_005808.1 + 16445 0.67 0.397729
Target:  5'- gCAUCGCagacgGCGAGCCGcugcgccaaAUCUGC-CGCGa -3'
miRNA:   3'- gGUAGUG-----CGCUCGGC---------UGGGCGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 14788 0.68 0.346615
Target:  5'- gCAgcgCGCGCGAGgaCGugCUGCggcugCGCGg -3'
miRNA:   3'- gGUa--GUGCGCUCg-GCugGGCGa----GCGC- -5'
26788 3' -59.6 NC_005808.1 + 16317 0.74 0.145943
Target:  5'- uCCAUCgcgcgcgauGCGCGAGCCGACCagGC-CgGCGg -3'
miRNA:   3'- -GGUAG---------UGCGCUCGGCUGGg-CGaG-CGC- -5'
26788 3' -59.6 NC_005808.1 + 31419 0.67 0.406706
Target:  5'- aCCAUCACcaCG-GCCGACCagCGCaCGCa -3'
miRNA:   3'- -GGUAGUGc-GCuCGGCUGG--GCGaGCGc -5'
26788 3' -59.6 NC_005808.1 + 6998 0.73 0.149924
Target:  5'- aCA-CGCGCGAGCgGGUCgGCUCGCGu -3'
miRNA:   3'- gGUaGUGCGCUCGgCUGGgCGAGCGC- -5'
26788 3' -59.6 NC_005808.1 + 14886 0.7 0.27229
Target:  5'- uCCAUgACcggcgGCGAGCCGcuGCCgGCgCGCGg -3'
miRNA:   3'- -GGUAgUG-----CGCUCGGC--UGGgCGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 31495 0.67 0.406706
Target:  5'- aCCAaUugGcCGcAGCCGACaaggUGCUCGCGc -3'
miRNA:   3'- -GGUaGugC-GC-UCGGCUGg---GCGAGCGC- -5'
26788 3' -59.6 NC_005808.1 + 36304 0.66 0.425037
Target:  5'- gCCGUCAauguCGUGGG-CGACCUGUUCGg- -3'
miRNA:   3'- -GGUAGU----GCGCUCgGCUGGGCGAGCgc -5'
26788 3' -59.6 NC_005808.1 + 26009 0.73 0.166854
Target:  5'- aCCAUCGCGUG-GUCGGCCuCGUccggCGCGu -3'
miRNA:   3'- -GGUAGUGCGCuCGGCUGG-GCGa---GCGC- -5'
26788 3' -59.6 NC_005808.1 + 19065 0.71 0.234165
Target:  5'- gCCAUCGacCGCGugcGCCGccuggaagGCgCGCUCGCGg -3'
miRNA:   3'- -GGUAGU--GCGCu--CGGC--------UGgGCGAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.