miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26788 3' -59.6 NC_005808.1 + 30357 0.72 0.200627
Target:  5'- gUCGUCGCGCGAGa--ACCCGC-CGCu -3'
miRNA:   3'- -GGUAGUGCGCUCggcUGGGCGaGCGc -5'
26788 3' -59.6 NC_005808.1 + 25301 0.66 0.443852
Target:  5'- -gGUCGUGCG-GCCGGCCCugccaccggcGCUCGUc -3'
miRNA:   3'- ggUAGUGCGCuCGGCUGGG----------CGAGCGc -5'
26788 3' -59.6 NC_005808.1 + 15239 0.66 0.443852
Target:  5'- aUCAUCaACGgcagaGGGUCGGCCUGC-CGCa -3'
miRNA:   3'- -GGUAG-UGCg----CUCGGCUGGGCGaGCGc -5'
26788 3' -59.6 NC_005808.1 + 39337 0.67 0.41581
Target:  5'- aCUAUCugGCGcggaAGCUGAauCCCGC-CGgGg -3'
miRNA:   3'- -GGUAGugCGC----UCGGCU--GGGCGaGCgC- -5'
26788 3' -59.6 NC_005808.1 + 23424 0.67 0.397729
Target:  5'- cCgGUCAgUGCGAcGCCGGCCgGgaUGCGg -3'
miRNA:   3'- -GgUAGU-GCGCU-CGGCUGGgCgaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 35150 0.67 0.380161
Target:  5'- gCCAuUCGCGCGAagGCCGAagccgaaCUGCUgGCc -3'
miRNA:   3'- -GGU-AGUGCGCU--CGGCUg------GGCGAgCGc -5'
26788 3' -59.6 NC_005808.1 + 4528 0.67 0.380161
Target:  5'- aCGUgGCGUGcugggcGGUCGugCCGC-CGCGg -3'
miRNA:   3'- gGUAgUGCGC------UCGGCugGGCGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 27820 0.68 0.363119
Target:  5'- uCC-UCGCGCGcGCUG-CCCGCgguggCGCc -3'
miRNA:   3'- -GGuAGUGCGCuCGGCuGGGCGa----GCGc -5'
26788 3' -59.6 NC_005808.1 + 26246 0.68 0.360609
Target:  5'- gCGUCGC-CGAaggcacgggcacccGCCGGCCUggucgGCUCGCGc -3'
miRNA:   3'- gGUAGUGcGCU--------------CGGCUGGG-----CGAGCGC- -5'
26788 3' -59.6 NC_005808.1 + 25202 0.68 0.338567
Target:  5'- gCA-CGCGCGAccGCUGGCCCgGCUUGUu -3'
miRNA:   3'- gGUaGUGCGCU--CGGCUGGG-CGAGCGc -5'
26788 3' -59.6 NC_005808.1 + 23761 0.68 0.32288
Target:  5'- gCCGgcgcCAC-CGGGCCGAUgCGC-CGCGg -3'
miRNA:   3'- -GGUa---GUGcGCUCGGCUGgGCGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 6385 0.69 0.307742
Target:  5'- -aAUCAgGCGcaGGCCGGCCgGCccgguguagUCGCGg -3'
miRNA:   3'- ggUAGUgCGC--UCGGCUGGgCG---------AGCGC- -5'
26788 3' -59.6 NC_005808.1 + 8658 0.69 0.300379
Target:  5'- uUCAUCGCGCGgucGGCauugCGugCCGCgCGCa -3'
miRNA:   3'- -GGUAGUGCGC---UCG----GCugGGCGaGCGc -5'
26788 3' -59.6 NC_005808.1 + 18556 0.69 0.300379
Target:  5'- uCgAUCACGUcGGUggaGGCCgCGCUCGCGg -3'
miRNA:   3'- -GgUAGUGCGcUCGg--CUGG-GCGAGCGC- -5'
26788 3' -59.6 NC_005808.1 + 865 0.69 0.293152
Target:  5'- aCAUCAUGCGAGCCGAgUUGaacaGCa -3'
miRNA:   3'- gGUAGUGCGCUCGGCUgGGCgag-CGc -5'
26788 3' -59.6 NC_005808.1 + 30131 0.69 0.286062
Target:  5'- gCCAgaaCACGCc-GCCGGCCUGCacCGCGu -3'
miRNA:   3'- -GGUa--GUGCGcuCGGCUGGGCGa-GCGC- -5'
26788 3' -59.6 NC_005808.1 + 19085 0.69 0.285361
Target:  5'- -gGUCACGCGAuugcagGCCGGCCUGCgaacccuUCGgGu -3'
miRNA:   3'- ggUAGUGCGCU------CGGCUGGGCG-------AGCgC- -5'
26788 3' -59.6 NC_005808.1 + 38379 0.7 0.246349
Target:  5'- aCGUUACGCaAGCCgcaagccgcGACgUGCUCGCGg -3'
miRNA:   3'- gGUAGUGCGcUCGG---------CUGgGCGAGCGC- -5'
26788 3' -59.6 NC_005808.1 + 17281 0.71 0.228264
Target:  5'- gCCGUcCACGa-AGCCGGCgCCGCgggCGCGc -3'
miRNA:   3'- -GGUA-GUGCgcUCGGCUG-GGCGa--GCGC- -5'
26788 3' -59.6 NC_005808.1 + 35593 1.09 0.000324
Target:  5'- cCCAUCACGCGAGCCGACCCGCUCGCGc -3'
miRNA:   3'- -GGUAGUGCGCUCGGCUGGGCGAGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.