miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26788 3' -59.6 NC_005808.1 + 865 0.69 0.293152
Target:  5'- aCAUCAUGCGAGCCGAgUUGaacaGCa -3'
miRNA:   3'- gGUAGUGCGCUCGGCUgGGCgag-CGc -5'
26788 3' -59.6 NC_005808.1 + 1748 0.66 0.443852
Target:  5'- aCAcCGgGCGgucauGGCCGGCCUGCgccuggCGCGu -3'
miRNA:   3'- gGUaGUgCGC-----UCGGCUGGGCGa-----GCGC- -5'
26788 3' -59.6 NC_005808.1 + 4528 0.67 0.380161
Target:  5'- aCGUgGCGUGcugggcGGUCGugCCGC-CGCGg -3'
miRNA:   3'- gGUAgUGCGC------UCGGCugGGCGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 5349 0.67 0.380161
Target:  5'- gCAUCGCGCugcguGGCCG-CCUGCacCGCGc -3'
miRNA:   3'- gGUAGUGCGc----UCGGCuGGGCGa-GCGC- -5'
26788 3' -59.6 NC_005808.1 + 6385 0.69 0.307742
Target:  5'- -aAUCAgGCGcaGGCCGGCCgGCccgguguagUCGCGg -3'
miRNA:   3'- ggUAGUgCGC--UCGGCUGGgCG---------AGCGC- -5'
26788 3' -59.6 NC_005808.1 + 6998 0.73 0.149924
Target:  5'- aCA-CGCGCGAGCgGGUCgGCUCGCGu -3'
miRNA:   3'- gGUaGUGCGCUCGgCUGGgCGAGCGC- -5'
26788 3' -59.6 NC_005808.1 + 8220 0.66 0.453433
Target:  5'- gCCAguucgUGCGCG-GCCGugCC-CUCGuCGg -3'
miRNA:   3'- -GGUa----GUGCGCuCGGCugGGcGAGC-GC- -5'
26788 3' -59.6 NC_005808.1 + 8658 0.69 0.300379
Target:  5'- uUCAUCGCGCGgucGGCauugCGugCCGCgCGCa -3'
miRNA:   3'- -GGUAGUGCGC---UCG----GCugGGCGaGCGc -5'
26788 3' -59.6 NC_005808.1 + 8973 0.66 0.463126
Target:  5'- gCCGgauUCGCaGCGguGGCCGugCCGC-CaGCGg -3'
miRNA:   3'- -GGU---AGUG-CGC--UCGGCugGGCGaG-CGC- -5'
26788 3' -59.6 NC_005808.1 + 9528 0.66 0.467033
Target:  5'- gCAUCAUGCugcGGCCcuguucggccagugcGAUCUGCUCGCc -3'
miRNA:   3'- gGUAGUGCGc--UCGG---------------CUGGGCGAGCGc -5'
26788 3' -59.6 NC_005808.1 + 10196 0.66 0.472926
Target:  5'- aCGUCAaGCGcacGCCGGCCCGauggUCgGCGg -3'
miRNA:   3'- gGUAGUgCGCu--CGGCUGGGCg---AG-CGC- -5'
26788 3' -59.6 NC_005808.1 + 11630 0.66 0.443852
Target:  5'- aCCGUCACGCcgaaguAGUCcGCCaGCUUGCGu -3'
miRNA:   3'- -GGUAGUGCGc-----UCGGcUGGgCGAGCGC- -5'
26788 3' -59.6 NC_005808.1 + 12710 0.66 0.4429
Target:  5'- cCUGUCAUGCcggggggggggugGuGCUaGACCCGUUCGCa -3'
miRNA:   3'- -GGUAGUGCG-------------CuCGG-CUGGGCGAGCGc -5'
26788 3' -59.6 NC_005808.1 + 13022 0.67 0.38888
Target:  5'- gCCuggGCGCG-GCCGACCUGa-CGCGa -3'
miRNA:   3'- -GGuagUGCGCuCGGCUGGGCgaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 13393 0.66 0.453433
Target:  5'- gCCAUgCGCGCGu-CCGACCUGC-CGg- -3'
miRNA:   3'- -GGUA-GUGCGCucGGCUGGGCGaGCgc -5'
26788 3' -59.6 NC_005808.1 + 14363 0.7 0.27229
Target:  5'- ---cCugGCGcAGuCCGACCCGCgCGUGg -3'
miRNA:   3'- gguaGugCGC-UC-GGCUGGGCGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 14788 0.68 0.346615
Target:  5'- gCAgcgCGCGCGAGgaCGugCUGCggcugCGCGg -3'
miRNA:   3'- gGUa--GUGCGCUCg-GCugGGCGa----GCGC- -5'
26788 3' -59.6 NC_005808.1 + 14886 0.7 0.27229
Target:  5'- uCCAUgACcggcgGCGAGCCGcuGCCgGCgCGCGg -3'
miRNA:   3'- -GGUAgUG-----CGCUCGGC--UGGgCGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 15239 0.66 0.443852
Target:  5'- aUCAUCaACGgcagaGGGUCGGCCUGC-CGCa -3'
miRNA:   3'- -GGUAG-UGCg----CUCGGCUGGGCGaGCGc -5'
26788 3' -59.6 NC_005808.1 + 16317 0.74 0.145943
Target:  5'- uCCAUCgcgcgcgauGCGCGAGCCGACCagGC-CgGCGg -3'
miRNA:   3'- -GGUAG---------UGCGCUCGGCUGGg-CGaG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.