miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26788 3' -59.6 NC_005808.1 + 16445 0.67 0.397729
Target:  5'- gCAUCGCagacgGCGAGCCGcugcgccaaAUCUGC-CGCGa -3'
miRNA:   3'- gGUAGUG-----CGCUCGGC---------UGGGCGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 17281 0.71 0.228264
Target:  5'- gCCGUcCACGa-AGCCGGCgCCGCgggCGCGc -3'
miRNA:   3'- -GGUA-GUGCgcUCGGCUG-GGCGa--GCGC- -5'
26788 3' -59.6 NC_005808.1 + 18556 0.69 0.300379
Target:  5'- uCgAUCACGUcGGUggaGGCCgCGCUCGCGg -3'
miRNA:   3'- -GgUAGUGCGcUCGg--CUGG-GCGAGCGC- -5'
26788 3' -59.6 NC_005808.1 + 18570 0.66 0.45247
Target:  5'- uCCGUCGCGuCGccuucgcugaauuGGCCGACgCGCccaccuUCGCc -3'
miRNA:   3'- -GGUAGUGC-GC-------------UCGGCUGgGCG------AGCGc -5'
26788 3' -59.6 NC_005808.1 + 18678 0.71 0.216283
Target:  5'- aCCAUCACGCcuauGCCGGCauggaagCCGCgggCGUGg -3'
miRNA:   3'- -GGUAGUGCGcu--CGGCUG-------GGCGa--GCGC- -5'
26788 3' -59.6 NC_005808.1 + 19065 0.71 0.234165
Target:  5'- gCCAUCGacCGCGugcGCCGccuggaagGCgCGCUCGCGg -3'
miRNA:   3'- -GGUAGU--GCGCu--CGGC--------UGgGCGAGCGC- -5'
26788 3' -59.6 NC_005808.1 + 19085 0.69 0.285361
Target:  5'- -gGUCACGCGAuugcagGCCGGCCUGCgaacccuUCGgGu -3'
miRNA:   3'- ggUAGUGCGCU------CGGCUGGGCG-------AGCgC- -5'
26788 3' -59.6 NC_005808.1 + 19395 0.66 0.434385
Target:  5'- gCCGaauUCAcCGaCGAGgCCGACCUGCugcugUCGCa -3'
miRNA:   3'- -GGU---AGU-GC-GCUC-GGCUGGGCG-----AGCGc -5'
26788 3' -59.6 NC_005808.1 + 20064 0.66 0.443852
Target:  5'- aCCGgcaCGCGCGcGCUGcGCgUGCUCGCu -3'
miRNA:   3'- -GGUa--GUGCGCuCGGC-UGgGCGAGCGc -5'
26788 3' -59.6 NC_005808.1 + 20523 0.67 0.41398
Target:  5'- gCCAUCGagcCGCGcGCCGACCgCGacccgagcaagCGCGa -3'
miRNA:   3'- -GGUAGU---GCGCuCGGCUGG-GCga---------GCGC- -5'
26788 3' -59.6 NC_005808.1 + 23424 0.67 0.397729
Target:  5'- cCgGUCAgUGCGAcGCCGGCCgGgaUGCGg -3'
miRNA:   3'- -GgUAGU-GCGCU-CGGCUGGgCgaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 23492 0.72 0.178759
Target:  5'- aCCAUCuacccgaaggguuCGCaGGCCGGCCUGCaaUCGCGu -3'
miRNA:   3'- -GGUAGu------------GCGcUCGGCUGGGCG--AGCGC- -5'
26788 3' -59.6 NC_005808.1 + 23761 0.68 0.32288
Target:  5'- gCCGgcgcCAC-CGGGCCGAUgCGC-CGCGg -3'
miRNA:   3'- -GGUa---GUGcGCUCGGCUGgGCGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 24029 0.66 0.443852
Target:  5'- gCCGUCAcCGCGAGCgCGGCCUcCaccgaCGUGa -3'
miRNA:   3'- -GGUAGU-GCGCUCG-GCUGGGcGa----GCGC- -5'
26788 3' -59.6 NC_005808.1 + 24116 0.66 0.463126
Target:  5'- gUCAUCACgGUGgacgaaucGGCCGACgCCGCcggCGCc -3'
miRNA:   3'- -GGUAGUG-CGC--------UCGGCUG-GGCGa--GCGc -5'
26788 3' -59.6 NC_005808.1 + 25202 0.68 0.338567
Target:  5'- gCA-CGCGCGAccGCUGGCCCgGCUUGUu -3'
miRNA:   3'- gGUaGUGCGCU--CGGCUGGG-CGAGCGc -5'
26788 3' -59.6 NC_005808.1 + 25301 0.66 0.443852
Target:  5'- -gGUCGUGCG-GCCGGCCCugccaccggcGCUCGUc -3'
miRNA:   3'- ggUAGUGCGCuCGGCUGGG----------CGAGCGc -5'
26788 3' -59.6 NC_005808.1 + 26009 0.73 0.166854
Target:  5'- aCCAUCGCGUG-GUCGGCCuCGUccggCGCGu -3'
miRNA:   3'- -GGUAGUGCGCuCGGCUGG-GCGa---GCGC- -5'
26788 3' -59.6 NC_005808.1 + 26246 0.68 0.360609
Target:  5'- gCGUCGC-CGAaggcacgggcacccGCCGGCCUggucgGCUCGCGc -3'
miRNA:   3'- gGUAGUGcGCU--------------CGGCUGGG-----CGAGCGC- -5'
26788 3' -59.6 NC_005808.1 + 27820 0.68 0.363119
Target:  5'- uCC-UCGCGCGcGCUG-CCCGCgguggCGCc -3'
miRNA:   3'- -GGuAGUGCGCuCGGCuGGGCGa----GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.