miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26788 3' -59.6 NC_005808.1 + 8658 0.69 0.300379
Target:  5'- uUCAUCGCGCGgucGGCauugCGugCCGCgCGCa -3'
miRNA:   3'- -GGUAGUGCGC---UCG----GCugGGCGaGCGc -5'
26788 3' -59.6 NC_005808.1 + 6385 0.69 0.307742
Target:  5'- -aAUCAgGCGcaGGCCGGCCgGCccgguguagUCGCGg -3'
miRNA:   3'- ggUAGUgCGC--UCGGCUGGgCG---------AGCGC- -5'
26788 3' -59.6 NC_005808.1 + 23761 0.68 0.32288
Target:  5'- gCCGgcgcCAC-CGGGCCGAUgCGC-CGCGg -3'
miRNA:   3'- -GGUa---GUGcGCUCGGCUGgGCGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 20523 0.67 0.41398
Target:  5'- gCCAUCGagcCGCGcGCCGACCgCGacccgagcaagCGCGa -3'
miRNA:   3'- -GGUAGU---GCGCuCGGCUGG-GCga---------GCGC- -5'
26788 3' -59.6 NC_005808.1 + 33809 0.67 0.414894
Target:  5'- aCCG--GCGCG-GCCGACCCaucgugcGC-CGCGu -3'
miRNA:   3'- -GGUagUGCGCuCGGCUGGG-------CGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 36304 0.66 0.425037
Target:  5'- gCCGUCAauguCGUGGG-CGACCUGUUCGg- -3'
miRNA:   3'- -GGUAGU----GCGCUCgGCUGGGCGAGCgc -5'
26788 3' -59.6 NC_005808.1 + 36206 0.66 0.434385
Target:  5'- aCUA-CAC-CGGGCCGGCCgGCcUGCGc -3'
miRNA:   3'- -GGUaGUGcGCUCGGCUGGgCGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 19395 0.66 0.434385
Target:  5'- gCCGaauUCAcCGaCGAGgCCGACCUGCugcugUCGCa -3'
miRNA:   3'- -GGU---AGU-GC-GCUC-GGCUGGGCG-----AGCGc -5'
26788 3' -59.6 NC_005808.1 + 12710 0.66 0.4429
Target:  5'- cCUGUCAUGCcggggggggggugGuGCUaGACCCGUUCGCa -3'
miRNA:   3'- -GGUAGUGCG-------------CuCGG-CUGGGCGAGCGc -5'
26788 3' -59.6 NC_005808.1 + 11630 0.66 0.443852
Target:  5'- aCCGUCACGCcgaaguAGUCcGCCaGCUUGCGu -3'
miRNA:   3'- -GGUAGUGCGc-----UCGGcUGGgCGAGCGC- -5'
26788 3' -59.6 NC_005808.1 + 24029 0.66 0.443852
Target:  5'- gCCGUCAcCGCGAGCgCGGCCUcCaccgaCGUGa -3'
miRNA:   3'- -GGUAGU-GCGCUCG-GCUGGGcGa----GCGC- -5'
26788 3' -59.6 NC_005808.1 + 1748 0.66 0.443852
Target:  5'- aCAcCGgGCGgucauGGCCGGCCUGCgccuggCGCGu -3'
miRNA:   3'- gGUaGUgCGC-----UCGGCUGGGCGa-----GCGC- -5'
26788 3' -59.6 NC_005808.1 + 20064 0.66 0.443852
Target:  5'- aCCGgcaCGCGCGcGCUGcGCgUGCUCGCu -3'
miRNA:   3'- -GGUa--GUGCGCuCGGC-UGgGCGAGCGc -5'
26788 3' -59.6 NC_005808.1 + 18570 0.66 0.45247
Target:  5'- uCCGUCGCGuCGccuucgcugaauuGGCCGACgCGCccaccuUCGCc -3'
miRNA:   3'- -GGUAGUGC-GC-------------UCGGCUGgGCG------AGCGc -5'
26788 3' -59.6 NC_005808.1 + 8220 0.66 0.453433
Target:  5'- gCCAguucgUGCGCG-GCCGugCC-CUCGuCGg -3'
miRNA:   3'- -GGUa----GUGCGCuCGGCugGGcGAGC-GC- -5'
26788 3' -59.6 NC_005808.1 + 13393 0.66 0.453433
Target:  5'- gCCAUgCGCGCGu-CCGACCUGC-CGg- -3'
miRNA:   3'- -GGUA-GUGCGCucGGCUGGGCGaGCgc -5'
26788 3' -59.6 NC_005808.1 + 24116 0.66 0.463126
Target:  5'- gUCAUCACgGUGgacgaaucGGCCGACgCCGCcggCGCc -3'
miRNA:   3'- -GGUAGUG-CGC--------UCGGCUG-GGCGa--GCGc -5'
26788 3' -59.6 NC_005808.1 + 8973 0.66 0.463126
Target:  5'- gCCGgauUCGCaGCGguGGCCGugCCGC-CaGCGg -3'
miRNA:   3'- -GGU---AGUG-CGC--UCGGCugGGCGaG-CGC- -5'
26788 3' -59.6 NC_005808.1 + 33757 0.66 0.472926
Target:  5'- gCCA--ACGC--GCUGGCCCGCgUUGCGg -3'
miRNA:   3'- -GGUagUGCGcuCGGCUGGGCG-AGCGC- -5'
26788 3' -59.6 NC_005808.1 + 31495 0.67 0.406706
Target:  5'- aCCAaUugGcCGcAGCCGACaaggUGCUCGCGc -3'
miRNA:   3'- -GGUaGugC-GC-UCGGCUGg---GCGAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.