miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26788 3' -59.6 NC_005808.1 + 14788 0.68 0.346615
Target:  5'- gCAgcgCGCGCGAGgaCGugCUGCggcugCGCGg -3'
miRNA:   3'- gGUa--GUGCGCUCg-GCugGGCGa----GCGC- -5'
26788 3' -59.6 NC_005808.1 + 27820 0.68 0.363119
Target:  5'- uCC-UCGCGCGcGCUG-CCCGCgguggCGCc -3'
miRNA:   3'- -GGuAGUGCGCuCGGCuGGGCGa----GCGc -5'
26788 3' -59.6 NC_005808.1 + 26246 0.68 0.360609
Target:  5'- gCGUCGC-CGAaggcacgggcacccGCCGGCCUggucgGCUCGCGc -3'
miRNA:   3'- gGUAGUGcGCU--------------CGGCUGGG-----CGAGCGC- -5'
26788 3' -59.6 NC_005808.1 + 25202 0.68 0.338567
Target:  5'- gCA-CGCGCGAccGCUGGCCCgGCUUGUu -3'
miRNA:   3'- gGUaGUGCGCU--CGGCUGGG-CGAGCGc -5'
26788 3' -59.6 NC_005808.1 + 23761 0.68 0.32288
Target:  5'- gCCGgcgcCAC-CGGGCCGAUgCGC-CGCGg -3'
miRNA:   3'- -GGUa---GUGcGCUCGGCUGgGCGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 33809 0.67 0.414894
Target:  5'- aCCG--GCGCG-GCCGACCCaucgugcGC-CGCGu -3'
miRNA:   3'- -GGUagUGCGCuCGGCUGGG-------CGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 20523 0.67 0.41398
Target:  5'- gCCAUCGagcCGCGcGCCGACCgCGacccgagcaagCGCGa -3'
miRNA:   3'- -GGUAGU---GCGCuCGGCUGG-GCga---------GCGC- -5'
26788 3' -59.6 NC_005808.1 + 31495 0.67 0.406706
Target:  5'- aCCAaUugGcCGcAGCCGACaaggUGCUCGCGc -3'
miRNA:   3'- -GGUaGugC-GC-UCGGCUGg---GCGAGCGC- -5'
26788 3' -59.6 NC_005808.1 + 31419 0.67 0.406706
Target:  5'- aCCAUCACcaCG-GCCGACCagCGCaCGCa -3'
miRNA:   3'- -GGUAGUGc-GCuCGGCUGG--GCGaGCGc -5'
26788 3' -59.6 NC_005808.1 + 16445 0.67 0.397729
Target:  5'- gCAUCGCagacgGCGAGCCGcugcgccaaAUCUGC-CGCGa -3'
miRNA:   3'- gGUAGUG-----CGCUCGGC---------UGGGCGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 13022 0.67 0.38888
Target:  5'- gCCuggGCGCG-GCCGACCUGa-CGCGa -3'
miRNA:   3'- -GGuagUGCGCuCGGCUGGGCgaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 5349 0.67 0.380161
Target:  5'- gCAUCGCGCugcguGGCCG-CCUGCacCGCGc -3'
miRNA:   3'- gGUAGUGCGc----UCGGCuGGGCGa-GCGC- -5'
26788 3' -59.6 NC_005808.1 + 4528 0.67 0.380161
Target:  5'- aCGUgGCGUGcugggcGGUCGugCCGC-CGCGg -3'
miRNA:   3'- gGUAgUGCGC------UCGGCugGGCGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 35150 0.67 0.380161
Target:  5'- gCCAuUCGCGCGAagGCCGAagccgaaCUGCUgGCc -3'
miRNA:   3'- -GGU-AGUGCGCU--CGGCUg------GGCGAgCGc -5'
26788 3' -59.6 NC_005808.1 + 23424 0.67 0.397729
Target:  5'- cCgGUCAgUGCGAcGCCGGCCgGgaUGCGg -3'
miRNA:   3'- -GgUAGU-GCGCU-CGGCUGGgCgaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 39337 0.67 0.41581
Target:  5'- aCUAUCugGCGcggaAGCUGAauCCCGC-CGgGg -3'
miRNA:   3'- -GGUAGugCGC----UCGGCU--GGGCGaGCgC- -5'
26788 3' -59.6 NC_005808.1 + 18570 0.66 0.45247
Target:  5'- uCCGUCGCGuCGccuucgcugaauuGGCCGACgCGCccaccuUCGCc -3'
miRNA:   3'- -GGUAGUGC-GC-------------UCGGCUGgGCG------AGCGc -5'
26788 3' -59.6 NC_005808.1 + 20064 0.66 0.443852
Target:  5'- aCCGgcaCGCGCGcGCUGcGCgUGCUCGCu -3'
miRNA:   3'- -GGUa--GUGCGCuCGGC-UGgGCGAGCGc -5'
26788 3' -59.6 NC_005808.1 + 1748 0.66 0.443852
Target:  5'- aCAcCGgGCGgucauGGCCGGCCUGCgccuggCGCGu -3'
miRNA:   3'- gGUaGUgCGC-----UCGGCUGGGCGa-----GCGC- -5'
26788 3' -59.6 NC_005808.1 + 33757 0.66 0.472926
Target:  5'- gCCA--ACGC--GCUGGCCCGCgUUGCGg -3'
miRNA:   3'- -GGUagUGCGcuCGGCUGGGCG-AGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.