miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26791 3' -53.7 NC_005808.1 + 35991 1.15 0.000421
Target:  5'- cGCGCCCGCUGGUCAUCGACAAAGACCg -3'
miRNA:   3'- -CGCGGGCGACCAGUAGCUGUUUCUGG- -5'
26791 3' -53.7 NC_005808.1 + 33733 0.78 0.187552
Target:  5'- cGCGCCCGCU--UCGUggCGACcGAGGCCa -3'
miRNA:   3'- -CGCGGGCGAccAGUA--GCUGuUUCUGG- -5'
26791 3' -53.7 NC_005808.1 + 14374 0.78 0.187552
Target:  5'- cCGaCCCGCgcgUGGUCGUCGGCGu-GGCCg -3'
miRNA:   3'- cGC-GGGCG---ACCAGUAGCUGUuuCUGG- -5'
26791 3' -53.7 NC_005808.1 + 11561 0.77 0.198112
Target:  5'- cUGCCCGCcGGUCAUCGAagcCAugccgcccAGGGCCg -3'
miRNA:   3'- cGCGGGCGaCCAGUAGCU---GU--------UUCUGG- -5'
26791 3' -53.7 NC_005808.1 + 34804 0.77 0.203031
Target:  5'- aGCGCCUGCUGGg---CGGCGAAGgguggacGCCg -3'
miRNA:   3'- -CGCGGGCGACCaguaGCUGUUUC-------UGG- -5'
26791 3' -53.7 NC_005808.1 + 18763 0.75 0.252212
Target:  5'- cUGCCUGCUGGUCAcgcCGGugccgcacuuCAAAGGCCa -3'
miRNA:   3'- cGCGGGCGACCAGUa--GCU----------GUUUCUGG- -5'
26791 3' -53.7 NC_005808.1 + 15709 0.75 0.279927
Target:  5'- gGCGUCCGcCUGGgCAUCGAacuggcgcGAGGCCa -3'
miRNA:   3'- -CGCGGGC-GACCaGUAGCUgu------UUCUGG- -5'
26791 3' -53.7 NC_005808.1 + 8392 0.75 0.287223
Target:  5'- cGCGCUgGCUGcGUagccaGUCGGCcAGGGCCg -3'
miRNA:   3'- -CGCGGgCGAC-CAg----UAGCUGuUUCUGG- -5'
26791 3' -53.7 NC_005808.1 + 37670 0.75 0.287223
Target:  5'- gGCGCCCgagggcaagaaGCUGGUCGUCG-Cc--GACCu -3'
miRNA:   3'- -CGCGGG-----------CGACCAGUAGCuGuuuCUGG- -5'
26791 3' -53.7 NC_005808.1 + 34885 0.75 0.287223
Target:  5'- aGCGUgCGCUGcaguUCAUCGGCAAGccGGCCg -3'
miRNA:   3'- -CGCGgGCGACc---AGUAGCUGUUU--CUGG- -5'
26791 3' -53.7 NC_005808.1 + 35442 0.74 0.302264
Target:  5'- aGCGCCCGgccCUGGUCAUCc----AGGCCg -3'
miRNA:   3'- -CGCGGGC---GACCAGUAGcuguuUCUGG- -5'
26791 3' -53.7 NC_005808.1 + 25760 0.72 0.395663
Target:  5'- gGCGCgCUGCUGGgCggCGGCAAcgauGGCCg -3'
miRNA:   3'- -CGCG-GGCGACCaGuaGCUGUUu---CUGG- -5'
26791 3' -53.7 NC_005808.1 + 27706 0.72 0.413576
Target:  5'- cGCGCCggcagcggcucgcCGCcGGUCAUgGACuugauGAGGCCc -3'
miRNA:   3'- -CGCGG-------------GCGaCCAGUAgCUGu----UUCUGG- -5'
26791 3' -53.7 NC_005808.1 + 15288 0.72 0.414533
Target:  5'- cGCGCCUGUgGG-CGUCGugGGAaGCCu -3'
miRNA:   3'- -CGCGGGCGaCCaGUAGCugUUUcUGG- -5'
26791 3' -53.7 NC_005808.1 + 7132 0.72 0.414533
Target:  5'- aCGUCCGCgaaGUCGUCGGCugcGGCCu -3'
miRNA:   3'- cGCGGGCGac-CAGUAGCUGuuuCUGG- -5'
26791 3' -53.7 NC_005808.1 + 18132 0.72 0.424173
Target:  5'- -gGCCaagcaGCaGGUCGUCGGCGucaaugucgccGAGGCCg -3'
miRNA:   3'- cgCGGg----CGaCCAGUAGCUGU-----------UUCUGG- -5'
26791 3' -53.7 NC_005808.1 + 34761 0.71 0.433946
Target:  5'- cGCGUgCGcCUGGUCAUCGuGCAGccgcgccucGACCa -3'
miRNA:   3'- -CGCGgGC-GACCAGUAGC-UGUUu--------CUGG- -5'
26791 3' -53.7 NC_005808.1 + 33746 0.71 0.443848
Target:  5'- cCGCaCCGUccUGGgcuaCGUCGGCGAGGACg -3'
miRNA:   3'- cGCG-GGCG--ACCa---GUAGCUGUUUCUGg -5'
26791 3' -53.7 NC_005808.1 + 11976 0.71 0.443848
Target:  5'- uGCGCCgGCUGGUCGcaaGAac-AGAUCg -3'
miRNA:   3'- -CGCGGgCGACCAGUag-CUguuUCUGG- -5'
26791 3' -53.7 NC_005808.1 + 23418 0.71 0.474294
Target:  5'- -aGCgCGCcGGUCAgugCGACGccGGCCg -3'
miRNA:   3'- cgCGgGCGaCCAGUa--GCUGUuuCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.