miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26791 3' -53.7 NC_005808.1 + 20112 0.69 0.582175
Target:  5'- gGCGCCCaGCacaccGUCGUCGAaugccacgccuuCGGGGGCCu -3'
miRNA:   3'- -CGCGGG-CGac---CAGUAGCU------------GUUUCUGG- -5'
26791 3' -53.7 NC_005808.1 + 14345 0.7 0.484673
Target:  5'- cGgGCCUGCUGGUUcgCGguguccuggaagGCGGGGGCa -3'
miRNA:   3'- -CgCGGGCGACCAGuaGC------------UGUUUCUGg -5'
26791 3' -53.7 NC_005808.1 + 27599 0.7 0.484673
Target:  5'- gGCGCCagaugGCgUGGUCGUCgcccuuGACGAuGGGCCg -3'
miRNA:   3'- -CGCGGg----CG-ACCAGUAG------CUGUU-UCUGG- -5'
26791 3' -53.7 NC_005808.1 + 11175 0.7 0.538066
Target:  5'- uGCGUgCGCUGGUCGgcCGugGugauGGugCg -3'
miRNA:   3'- -CGCGgGCGACCAGUa-GCugUu---UCugG- -5'
26791 3' -53.7 NC_005808.1 + 4953 0.69 0.548999
Target:  5'- aCGUCUGCgaGGUUAUCGACA---ACCg -3'
miRNA:   3'- cGCGGGCGa-CCAGUAGCUGUuucUGG- -5'
26791 3' -53.7 NC_005808.1 + 38736 0.69 0.56
Target:  5'- cGCGUCaggaaGCUGGg---CGGCGAGGugCg -3'
miRNA:   3'- -CGCGGg----CGACCaguaGCUGUUUCugG- -5'
26791 3' -53.7 NC_005808.1 + 5184 0.69 0.571062
Target:  5'- cCGCCUGCacGUCGUCGAUAuu-GCCg -3'
miRNA:   3'- cGCGGGCGacCAGUAGCUGUuucUGG- -5'
26791 3' -53.7 NC_005808.1 + 2017 0.69 0.582175
Target:  5'- gGCGCUCGCUGGcgaaGUCG-CGcAGGCg -3'
miRNA:   3'- -CGCGGGCGACCag--UAGCuGUuUCUGg -5'
26791 3' -53.7 NC_005808.1 + 24316 0.69 0.582175
Target:  5'- gGCGagcagCCGCgGGUCAggCGGCAGAGcgauGCCc -3'
miRNA:   3'- -CGCg----GGCGaCCAGUa-GCUGUUUC----UGG- -5'
26791 3' -53.7 NC_005808.1 + 23418 0.71 0.474294
Target:  5'- -aGCgCGCcGGUCAgugCGACGccGGCCg -3'
miRNA:   3'- cgCGgGCGaCCAGUa--GCUGUuuCUGG- -5'
26791 3' -53.7 NC_005808.1 + 33746 0.71 0.443848
Target:  5'- cCGCaCCGUccUGGgcuaCGUCGGCGAGGACg -3'
miRNA:   3'- cGCG-GGCG--ACCa---GUAGCUGUUUCUGg -5'
26791 3' -53.7 NC_005808.1 + 34761 0.71 0.433946
Target:  5'- cGCGUgCGcCUGGUCAUCGuGCAGccgcgccucGACCa -3'
miRNA:   3'- -CGCGgGC-GACCAGUAGC-UGUUu--------CUGG- -5'
26791 3' -53.7 NC_005808.1 + 11561 0.77 0.198112
Target:  5'- cUGCCCGCcGGUCAUCGAagcCAugccgcccAGGGCCg -3'
miRNA:   3'- cGCGGGCGaCCAGUAGCU---GU--------UUCUGG- -5'
26791 3' -53.7 NC_005808.1 + 15709 0.75 0.279927
Target:  5'- gGCGUCCGcCUGGgCAUCGAacuggcgcGAGGCCa -3'
miRNA:   3'- -CGCGGGC-GACCaGUAGCUgu------UUCUGG- -5'
26791 3' -53.7 NC_005808.1 + 8392 0.75 0.287223
Target:  5'- cGCGCUgGCUGcGUagccaGUCGGCcAGGGCCg -3'
miRNA:   3'- -CGCGGgCGAC-CAg----UAGCUGuUUCUGG- -5'
26791 3' -53.7 NC_005808.1 + 34885 0.75 0.287223
Target:  5'- aGCGUgCGCUGcaguUCAUCGGCAAGccGGCCg -3'
miRNA:   3'- -CGCGgGCGACc---AGUAGCUGUUU--CUGG- -5'
26791 3' -53.7 NC_005808.1 + 37670 0.75 0.287223
Target:  5'- gGCGCCCgagggcaagaaGCUGGUCGUCG-Cc--GACCu -3'
miRNA:   3'- -CGCGGG-----------CGACCAGUAGCuGuuuCUGG- -5'
26791 3' -53.7 NC_005808.1 + 35442 0.74 0.302264
Target:  5'- aGCGCCCGgccCUGGUCAUCc----AGGCCg -3'
miRNA:   3'- -CGCGGGC---GACCAGUAGcuguuUCUGG- -5'
26791 3' -53.7 NC_005808.1 + 25760 0.72 0.395663
Target:  5'- gGCGCgCUGCUGGgCggCGGCAAcgauGGCCg -3'
miRNA:   3'- -CGCG-GGCGACCaGuaGCUGUUu---CUGG- -5'
26791 3' -53.7 NC_005808.1 + 27706 0.72 0.413576
Target:  5'- cGCGCCggcagcggcucgcCGCcGGUCAUgGACuugauGAGGCCc -3'
miRNA:   3'- -CGCGG-------------GCGaCCAGUAgCUGu----UUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.