Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26791 | 3' | -53.7 | NC_005808.1 | + | 860 | 0.67 | 0.682979 |
Target: 5'- -gGCCUGUaUGGcUUucguuucccuAUCGACGAGGGCCg -3' miRNA: 3'- cgCGGGCG-ACC-AG----------UAGCUGUUUCUGG- -5' |
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26791 | 3' | -53.7 | NC_005808.1 | + | 2017 | 0.69 | 0.582175 |
Target: 5'- gGCGCUCGCUGGcgaaGUCG-CGcAGGCg -3' miRNA: 3'- -CGCGGGCGACCag--UAGCuGUuUCUGg -5' |
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26791 | 3' | -53.7 | NC_005808.1 | + | 2799 | 0.66 | 0.737715 |
Target: 5'- uGCGCCCaCU--UCGUCGAUucgucGGGCCa -3' miRNA: 3'- -CGCGGGcGAccAGUAGCUGuu---UCUGG- -5' |
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26791 | 3' | -53.7 | NC_005808.1 | + | 4953 | 0.69 | 0.548999 |
Target: 5'- aCGUCUGCgaGGUUAUCGACA---ACCg -3' miRNA: 3'- cGCGGGCGa-CCAGUAGCUGUuucUGG- -5' |
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26791 | 3' | -53.7 | NC_005808.1 | + | 4970 | 0.68 | 0.649434 |
Target: 5'- uCGCgCUGCUGGUCAguuccaGACGuuGGCg -3' miRNA: 3'- cGCG-GGCGACCAGUag----CUGUuuCUGg -5' |
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26791 | 3' | -53.7 | NC_005808.1 | + | 5056 | 0.68 | 0.648312 |
Target: 5'- gGCGaCCGCUGcauugauGUUGUCGGCAuugccGACCg -3' miRNA: 3'- -CGCgGGCGAC-------CAGUAGCUGUuu---CUGG- -5' |
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26791 | 3' | -53.7 | NC_005808.1 | + | 5184 | 0.69 | 0.571062 |
Target: 5'- cCGCCUGCacGUCGUCGAUAuu-GCCg -3' miRNA: 3'- cGCGGGCGacCAGUAGCUGUuucUGG- -5' |
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26791 | 3' | -53.7 | NC_005808.1 | + | 5238 | 0.66 | 0.758919 |
Target: 5'- aCGCCacgguguugaCGUUGG-CGUUGGCAccGGCCa -3' miRNA: 3'- cGCGG----------GCGACCaGUAGCUGUuuCUGG- -5' |
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26791 | 3' | -53.7 | NC_005808.1 | + | 5555 | 0.66 | 0.726941 |
Target: 5'- uCGCCCGCcacGG-UAUCGACGGc-GCCa -3' miRNA: 3'- cGCGGGCGa--CCaGUAGCUGUUucUGG- -5' |
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26791 | 3' | -53.7 | NC_005808.1 | + | 6529 | 0.69 | 0.593332 |
Target: 5'- uGCGCCCacaguucgauGCUGG-CGUUGACGuAGcaGCCc -3' miRNA: 3'- -CGCGGG----------CGACCaGUAGCUGUuUC--UGG- -5' |
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26791 | 3' | -53.7 | NC_005808.1 | + | 7132 | 0.72 | 0.414533 |
Target: 5'- aCGUCCGCgaaGUCGUCGGCugcGGCCu -3' miRNA: 3'- cGCGGGCGac-CAGUAGCUGuuuCUGG- -5' |
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26791 | 3' | -53.7 | NC_005808.1 | + | 8195 | 0.69 | 0.548999 |
Target: 5'- cUGCCCGUUcGUCAgCGACAuggcGGCCa -3' miRNA: 3'- cGCGGGCGAcCAGUaGCUGUuu--CUGG- -5' |
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26791 | 3' | -53.7 | NC_005808.1 | + | 8392 | 0.75 | 0.287223 |
Target: 5'- cGCGCUgGCUGcGUagccaGUCGGCcAGGGCCg -3' miRNA: 3'- -CGCGGgCGAC-CAg----UAGCUGuUUCUGG- -5' |
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26791 | 3' | -53.7 | NC_005808.1 | + | 11175 | 0.7 | 0.538066 |
Target: 5'- uGCGUgCGCUGGUCGgcCGugGugauGGugCg -3' miRNA: 3'- -CGCGgGCGACCAGUa-GCugUu---UCugG- -5' |
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26791 | 3' | -53.7 | NC_005808.1 | + | 11561 | 0.77 | 0.198112 |
Target: 5'- cUGCCCGCcGGUCAUCGAagcCAugccgcccAGGGCCg -3' miRNA: 3'- cGCGGGCGaCCAGUAGCU---GU--------UUCUGG- -5' |
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26791 | 3' | -53.7 | NC_005808.1 | + | 11792 | 0.66 | 0.769324 |
Target: 5'- uGCGCaaGCgUGGUCAUCGGgGAAa--- -3' miRNA: 3'- -CGCGggCG-ACCAGUAGCUgUUUcugg -5' |
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26791 | 3' | -53.7 | NC_005808.1 | + | 11976 | 0.71 | 0.443848 |
Target: 5'- uGCGCCgGCUGGUCGcaaGAac-AGAUCg -3' miRNA: 3'- -CGCGGgCGACCAGUag-CUguuUCUGG- -5' |
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26791 | 3' | -53.7 | NC_005808.1 | + | 12938 | 0.68 | 0.62023 |
Target: 5'- cGCGCCCuGCUGGgcaacggcuaccucaUCAUCcccACAAGcccGGCCa -3' miRNA: 3'- -CGCGGG-CGACC---------------AGUAGc--UGUUU---CUGG- -5' |
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26791 | 3' | -53.7 | NC_005808.1 | + | 13401 | 0.69 | 0.56 |
Target: 5'- cGCGUCCGaccugccGGUCAUC-ACcGAGGCCc -3' miRNA: 3'- -CGCGGGCga-----CCAGUAGcUGuUUCUGG- -5' |
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26791 | 3' | -53.7 | NC_005808.1 | + | 13746 | 0.67 | 0.671833 |
Target: 5'- gGCGCggCGCUGGgacagCuUCGGCAAGuccGGCCg -3' miRNA: 3'- -CGCGg-GCGACCa----GuAGCUGUUU---CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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