miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26793 5' -52.9 NC_005808.1 + 38718 0.66 0.778931
Target:  5'- gGCGgCGAcGGCAGCGC---GGCCUACa -3'
miRNA:   3'- -UGUgGCU-CUGUUGCGguaCUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 14560 0.66 0.778931
Target:  5'- uCGCCGAcguguucuucGGCGACGCCGacaUGAUCgGCUu -3'
miRNA:   3'- uGUGGCU----------CUGUUGCGGU---ACUGGaUGA- -5'
26793 5' -52.9 NC_005808.1 + 35572 0.66 0.778931
Target:  5'- uACGCgCGAGAuCAACGCCAaGuCCU-Cg -3'
miRNA:   3'- -UGUG-GCUCU-GUUGCGGUaCuGGAuGa -5'
26793 5' -52.9 NC_005808.1 + 33073 0.66 0.777893
Target:  5'- uCAUCGGGucgcgcaGCGACGCgGcGGCCUACa -3'
miRNA:   3'- uGUGGCUC-------UGUUGCGgUaCUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 17292 0.66 0.768476
Target:  5'- aGCGCCGGuGGCAGgGCCGgccgcacGACCUcaagGCa -3'
miRNA:   3'- -UGUGGCU-CUGUUgCGGUa------CUGGA----UGa -5'
26793 5' -52.9 NC_005808.1 + 39143 0.66 0.768476
Target:  5'- aACAUCGGGGCGcgcgGCGUCuGUGACCa--- -3'
miRNA:   3'- -UGUGGCUCUGU----UGCGG-UACUGGauga -5'
26793 5' -52.9 NC_005808.1 + 7933 0.66 0.767422
Target:  5'- aACACCGGcgcgaggauuuccGACAGCuugcCCGUGGCCUcgGCg -3'
miRNA:   3'- -UGUGGCU-------------CUGUUGc---GGUACUGGA--UGa -5'
26793 5' -52.9 NC_005808.1 + 32533 0.66 0.757868
Target:  5'- uCGCCccGACGACGCCucgGACgCUAUUg -3'
miRNA:   3'- uGUGGcuCUGUUGCGGua-CUG-GAUGA- -5'
26793 5' -52.9 NC_005808.1 + 14399 0.66 0.757868
Target:  5'- -gGCCGAccugGACAagGCGCCGc-ACCUGCUg -3'
miRNA:   3'- ugUGGCU----CUGU--UGCGGUacUGGAUGA- -5'
26793 5' -52.9 NC_005808.1 + 13855 0.66 0.757868
Target:  5'- cGCACCGcgcuGGACGAUGCCAaGGCgCU-Ca -3'
miRNA:   3'- -UGUGGC----UCUGUUGCGGUaCUG-GAuGa -5'
26793 5' -52.9 NC_005808.1 + 35988 0.66 0.757868
Target:  5'- gGCGgCG-GACuACGCCAUGcUCUACg -3'
miRNA:   3'- -UGUgGCuCUGuUGCGGUACuGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 8444 0.66 0.757868
Target:  5'- aACAUCGGcGCGAUGUCGgcgucgaggUGGCCUGCg -3'
miRNA:   3'- -UGUGGCUcUGUUGCGGU---------ACUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 24466 0.66 0.747122
Target:  5'- gACGCCGAcGACc-UGCUgcuUGGCCUGCg -3'
miRNA:   3'- -UGUGGCU-CUGuuGCGGu--ACUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 34683 0.66 0.747122
Target:  5'- gACGCCGAGcGCAACGagCAgcuggcGAUCUACg -3'
miRNA:   3'- -UGUGGCUC-UGUUGCg-GUa-----CUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 29150 0.66 0.747122
Target:  5'- cGCGCCcGAGGC--CGCCAagcuggcgGGCCUGCc -3'
miRNA:   3'- -UGUGG-CUCUGuuGCGGUa-------CUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 40548 0.66 0.746041
Target:  5'- gACcCCGAGGaauugcGCGCCGUGuucuaucGCCUGCg -3'
miRNA:   3'- -UGuGGCUCUgu----UGCGGUAC-------UGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 15089 0.66 0.73625
Target:  5'- cGCGCCGAGAagcuGGCgGCCGaGGCCgccgGCa -3'
miRNA:   3'- -UGUGGCUCUg---UUG-CGGUaCUGGa---UGa -5'
26793 5' -52.9 NC_005808.1 + 41979 0.66 0.73625
Target:  5'- cGCGCCGAGGCuGAgGCCAUcaucGCCgACa -3'
miRNA:   3'- -UGUGGCUCUG-UUgCGGUAc---UGGaUGa -5'
26793 5' -52.9 NC_005808.1 + 35772 0.67 0.725265
Target:  5'- uCGCCGAgGGCAacgacgaaacccGCGCCGUGuCCcugGCUg -3'
miRNA:   3'- uGUGGCU-CUGU------------UGCGGUACuGGa--UGA- -5'
26793 5' -52.9 NC_005808.1 + 33747 0.67 0.725265
Target:  5'- gGCgACCGAGGcCAACGCgcUGGCCcGCg -3'
miRNA:   3'- -UG-UGGCUCU-GUUGCGguACUGGaUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.