miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26793 5' -52.9 NC_005808.1 + 835 0.71 0.447758
Target:  5'- cGCGCaGAGACAGCGagccgaCCGUGGCCUGu- -3'
miRNA:   3'- -UGUGgCUCUGUUGC------GGUACUGGAUga -5'
26793 5' -52.9 NC_005808.1 + 1747 0.72 0.408043
Target:  5'- aACACCGGGcgguCAugGCC--GGCCUGCg -3'
miRNA:   3'- -UGUGGCUCu---GUugCGGuaCUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 4570 0.68 0.66909
Target:  5'- uCGCCGAGGCGcugcucgguGCGCCAggcgagGAaCUGCUc -3'
miRNA:   3'- uGUGGCUCUGU---------UGCGGUa-----CUgGAUGA- -5'
26793 5' -52.9 NC_005808.1 + 4685 0.67 0.703007
Target:  5'- cGCGCCG-GAUAGCGCggcgagaAUGGCCgGCa -3'
miRNA:   3'- -UGUGGCuCUGUUGCGg------UACUGGaUGa -5'
26793 5' -52.9 NC_005808.1 + 5753 0.68 0.634835
Target:  5'- cGCGCCGGGcaGCGaguGCGCCAgGGCCUugACc -3'
miRNA:   3'- -UGUGGCUC--UGU---UGCGGUaCUGGA--UGa -5'
26793 5' -52.9 NC_005808.1 + 7055 0.75 0.268682
Target:  5'- cCACCGGGGCGgccagguacuucaugACGCCGcGGCCUACc -3'
miRNA:   3'- uGUGGCUCUGU---------------UGCGGUaCUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 7198 0.73 0.379743
Target:  5'- -aGCCGGGACAGCGCgAUGuCCacgGCa -3'
miRNA:   3'- ugUGGCUCUGUUGCGgUACuGGa--UGa -5'
26793 5' -52.9 NC_005808.1 + 7627 0.68 0.66909
Target:  5'- aGCGCCGGacACGugGCCuUGGCCUuGCa -3'
miRNA:   3'- -UGUGGCUc-UGUugCGGuACUGGA-UGa -5'
26793 5' -52.9 NC_005808.1 + 7933 0.66 0.767422
Target:  5'- aACACCGGcgcgaggauuuccGACAGCuugcCCGUGGCCUcgGCg -3'
miRNA:   3'- -UGUGGCU-------------CUGUUGc---GGUACUGGA--UGa -5'
26793 5' -52.9 NC_005808.1 + 8444 0.66 0.757868
Target:  5'- aACAUCGGcGCGAUGUCGgcgucgaggUGGCCUGCg -3'
miRNA:   3'- -UGUGGCUcUGUUGCGGU---------ACUGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 9187 0.67 0.691759
Target:  5'- gGCGCCGu--CGACGU--UGGCCUGCUc -3'
miRNA:   3'- -UGUGGCucuGUUGCGguACUGGAUGA- -5'
26793 5' -52.9 NC_005808.1 + 11499 0.72 0.437627
Target:  5'- gACACCGcaaaGGGCAGCGCCugcgcuggcGUGAggcCCUGCg -3'
miRNA:   3'- -UGUGGC----UCUGUUGCGG---------UACU---GGAUGa -5'
26793 5' -52.9 NC_005808.1 + 13290 0.68 0.66909
Target:  5'- aGCGCCGAuuGCAgcGCGCCggGGCCgGCg -3'
miRNA:   3'- -UGUGGCUc-UGU--UGCGGuaCUGGaUGa -5'
26793 5' -52.9 NC_005808.1 + 13855 0.66 0.757868
Target:  5'- cGCACCGcgcuGGACGAUGCCAaGGCgCU-Ca -3'
miRNA:   3'- -UGUGGC----UCUGUUGCGGUaCUG-GAuGa -5'
26793 5' -52.9 NC_005808.1 + 14399 0.66 0.757868
Target:  5'- -gGCCGAccugGACAagGCGCCGc-ACCUGCUg -3'
miRNA:   3'- ugUGGCU----CUGU--UGCGGUacUGGAUGA- -5'
26793 5' -52.9 NC_005808.1 + 14560 0.66 0.778931
Target:  5'- uCGCCGAcguguucuucGGCGACGCCGacaUGAUCgGCUu -3'
miRNA:   3'- uGUGGCU----------CUGUUGCGGU---ACUGGaUGA- -5'
26793 5' -52.9 NC_005808.1 + 14638 0.69 0.577827
Target:  5'- cCACCGAgGACGugcuCGCCAUccCCUACg -3'
miRNA:   3'- uGUGGCU-CUGUu---GCGGUAcuGGAUGa -5'
26793 5' -52.9 NC_005808.1 + 14779 0.68 0.646271
Target:  5'- cCACCGcGGGCAGCGCgCGcgagGACgUGCUg -3'
miRNA:   3'- uGUGGC-UCUGUUGCG-GUa---CUGgAUGA- -5'
26793 5' -52.9 NC_005808.1 + 15089 0.66 0.73625
Target:  5'- cGCGCCGAGAagcuGGCgGCCGaGGCCgccgGCa -3'
miRNA:   3'- -UGUGGCUCUg---UUG-CGGUaCUGGa---UGa -5'
26793 5' -52.9 NC_005808.1 + 15145 0.71 0.447758
Target:  5'- cGCGCUGGcauacCAGCGCCAgGGCCUGCg -3'
miRNA:   3'- -UGUGGCUcu---GUUGCGGUaCUGGAUGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.