Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26793 | 5' | -52.9 | NC_005808.1 | + | 36342 | 1.07 | 0.001663 |
Target: 5'- cACACCGAGACAACGCCAUGACCUACUu -3' miRNA: 3'- -UGUGGCUCUGUUGCGGUACUGGAUGA- -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 25661 | 0.81 | 0.117873 |
Target: 5'- cACGCUGcuGGACGGCGCCGUGcCCUACg -3' miRNA: 3'- -UGUGGC--UCUGUUGCGGUACuGGAUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 17453 | 0.76 | 0.232439 |
Target: 5'- aGCAUCGAGGCcaggugccACGCCAgGGCCUGCa -3' miRNA: 3'- -UGUGGCUCUGu-------UGCGGUaCUGGAUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 7055 | 0.75 | 0.268682 |
Target: 5'- cCACCGGGGCGgccagguacuucaugACGCCGcGGCCUACc -3' miRNA: 3'- uGUGGCUCUGU---------------UGCGGUaCUGGAUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 35081 | 0.74 | 0.303039 |
Target: 5'- cGCACgGuAGACAACGCCAUccucggcaACCUGCUg -3' miRNA: 3'- -UGUGgC-UCUGUUGCGGUAc-------UGGAUGA- -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 7198 | 0.73 | 0.379743 |
Target: 5'- -aGCCGGGACAGCGCgAUGuCCacgGCa -3' miRNA: 3'- ugUGGCUCUGUUGCGgUACuGGa--UGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 37843 | 0.72 | 0.389029 |
Target: 5'- aACGCCGAGaACAucGCgGCCGUGGCCg--- -3' miRNA: 3'- -UGUGGCUC-UGU--UG-CGGUACUGGauga -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 37098 | 0.72 | 0.398464 |
Target: 5'- gGCACCGAGuuGGCGCUAUGGCa---- -3' miRNA: 3'- -UGUGGCUCugUUGCGGUACUGgauga -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 1747 | 0.72 | 0.408043 |
Target: 5'- aACACCGGGcgguCAugGCC--GGCCUGCg -3' miRNA: 3'- -UGUGGCUCu---GUugCGGuaCUGGAUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 11499 | 0.72 | 0.437627 |
Target: 5'- gACACCGcaaaGGGCAGCGCCugcgcuggcGUGAggcCCUGCg -3' miRNA: 3'- -UGUGGC----UCUGUUGCGG---------UACU---GGAUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 835 | 0.71 | 0.447758 |
Target: 5'- cGCGCaGAGACAGCGagccgaCCGUGGCCUGu- -3' miRNA: 3'- -UGUGgCUCUGUUGC------GGUACUGGAUga -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 15145 | 0.71 | 0.447758 |
Target: 5'- cGCGCUGGcauacCAGCGCCAgGGCCUGCg -3' miRNA: 3'- -UGUGGCUcu---GUUGCGGUaCUGGAUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 37589 | 0.7 | 0.52201 |
Target: 5'- gGCGCUGAaagcgGACuGCGCC--GACCUGCUg -3' miRNA: 3'- -UGUGGCU-----CUGuUGCGGuaCUGGAUGA- -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 27583 | 0.69 | 0.566533 |
Target: 5'- gGCACCGgcagcAGGCGGCGCCAgaUGGCgUGg- -3' miRNA: 3'- -UGUGGC-----UCUGUUGCGGU--ACUGgAUga -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 41961 | 0.69 | 0.577827 |
Target: 5'- gGCACCGAcucGACGccggACGCCGUGuCCacgGCg -3' miRNA: 3'- -UGUGGCU---CUGU----UGCGGUACuGGa--UGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 14638 | 0.69 | 0.577827 |
Target: 5'- cCACCGAgGACGugcuCGCCAUccCCUACg -3' miRNA: 3'- uGUGGCU-CUGUu---GCGGUAcuGGAUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 38030 | 0.69 | 0.577828 |
Target: 5'- cGCACCGAG-CAGCGCCucggcGACUUcgGCc -3' miRNA: 3'- -UGUGGCUCuGUUGCGGua---CUGGA--UGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 27031 | 0.69 | 0.600554 |
Target: 5'- cGCGUCGucacuGACGGCGCCAUuGACCUGg- -3' miRNA: 3'- -UGUGGCu----CUGUUGCGGUA-CUGGAUga -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 23216 | 0.68 | 0.611965 |
Target: 5'- uACGCCGAagugGACAAgGCCcUGGCCgACc -3' miRNA: 3'- -UGUGGCU----CUGUUgCGGuACUGGaUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 37290 | 0.68 | 0.623396 |
Target: 5'- -gGCCGGcGACcuggaaaauaucGACGCCGUGGCCgACa -3' miRNA: 3'- ugUGGCU-CUG------------UUGCGGUACUGGaUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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