Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26793 | 5' | -52.9 | NC_005808.1 | + | 5753 | 0.68 | 0.634835 |
Target: 5'- cGCGCCGGGcaGCGaguGCGCCAgGGCCUugACc -3' miRNA: 3'- -UGUGGCUC--UGU---UGCGGUaCUGGA--UGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 32586 | 0.68 | 0.634835 |
Target: 5'- gACACCGc--CGACGCUGUGACCaaGCUg -3' miRNA: 3'- -UGUGGCucuGUUGCGGUACUGGa-UGA- -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 15771 | 0.68 | 0.646271 |
Target: 5'- cCAUCGGGGCGGCGCa---GCCUGCc -3' miRNA: 3'- uGUGGCUCUGUUGCGguacUGGAUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 26171 | 0.68 | 0.646271 |
Target: 5'- aACGCCGccGGCGAUuaccccgcgGCCGUGuCCUACUu -3' miRNA: 3'- -UGUGGCu-CUGUUG---------CGGUACuGGAUGA- -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 34829 | 0.68 | 0.646271 |
Target: 5'- gACGCCGGcGCAgaucGCGCCG-GugCUGCa -3' miRNA: 3'- -UGUGGCUcUGU----UGCGGUaCugGAUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 14779 | 0.68 | 0.646271 |
Target: 5'- cCACCGcGGGCAGCGCgCGcgagGACgUGCUg -3' miRNA: 3'- uGUGGC-UCUGUUGCG-GUa---CUGgAUGA- -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 4570 | 0.68 | 0.66909 |
Target: 5'- uCGCCGAGGCGcugcucgguGCGCCAggcgagGAaCUGCUc -3' miRNA: 3'- uGUGGCUCUGU---------UGCGGUa-----CUgGAUGA- -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 7627 | 0.68 | 0.66909 |
Target: 5'- aGCGCCGGacACGugGCCuUGGCCUuGCa -3' miRNA: 3'- -UGUGGCUc-UGUugCGGuACUGGA-UGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 13290 | 0.68 | 0.66909 |
Target: 5'- aGCGCCGAuuGCAgcGCGCCggGGCCgGCg -3' miRNA: 3'- -UGUGGCUc-UGU--UGCGGuaCUGGaUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 39858 | 0.68 | 0.66909 |
Target: 5'- cACGcCCGAG-CAGCGCCG-GGCCgcGCUc -3' miRNA: 3'- -UGU-GGCUCuGUUGCGGUaCUGGa-UGA- -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 34596 | 0.68 | 0.66909 |
Target: 5'- gGCGCCaaGGGCAcguccgACGCCGUgGugCUGCUg -3' miRNA: 3'- -UGUGGc-UCUGU------UGCGGUA-CugGAUGA- -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 26534 | 0.68 | 0.66909 |
Target: 5'- gGCGCCGcGcGCGGCgGCCAcgugcgcgaacUGGCCUACa -3' miRNA: 3'- -UGUGGCuC-UGUUG-CGGU-----------ACUGGAUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 18879 | 0.67 | 0.680449 |
Target: 5'- cCACCGAGGCAcugGC-CCGcGACCUGg- -3' miRNA: 3'- uGUGGCUCUGU---UGcGGUaCUGGAUga -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 23468 | 0.67 | 0.690631 |
Target: 5'- cACGCCGGcGugGaacagguGCGCCGUgggaaucucGACCUGCg -3' miRNA: 3'- -UGUGGCU-CugU-------UGCGGUA---------CUGGAUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 9187 | 0.67 | 0.691759 |
Target: 5'- gGCGCCGu--CGACGU--UGGCCUGCUc -3' miRNA: 3'- -UGUGGCucuGUUGCGguACUGGAUGA- -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 18018 | 0.67 | 0.691759 |
Target: 5'- cACGCCG-GACGGCccgaCCGUGGCCgGCc -3' miRNA: 3'- -UGUGGCuCUGUUGc---GGUACUGGaUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 30128 | 0.67 | 0.691759 |
Target: 5'- cGCGCC-AGAacACGCCGccGGCCUGCa -3' miRNA: 3'- -UGUGGcUCUguUGCGGUa-CUGGAUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 16004 | 0.67 | 0.701885 |
Target: 5'- cGCGCaGGGACAGguCGCCGgugacgaaaccguUGGCCUGCc -3' miRNA: 3'- -UGUGgCUCUGUU--GCGGU-------------ACUGGAUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 4685 | 0.67 | 0.703007 |
Target: 5'- cGCGCCG-GAUAGCGCggcgagaAUGGCCgGCa -3' miRNA: 3'- -UGUGGCuCUGUUGCGg------UACUGGaUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 29090 | 0.67 | 0.703007 |
Target: 5'- gGCGCCGAGGuCAG-GCCcgugcggGACUUGCUg -3' miRNA: 3'- -UGUGGCUCU-GUUgCGGua-----CUGGAUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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