Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26793 | 5' | -52.9 | NC_005808.1 | + | 41979 | 0.66 | 0.73625 |
Target: 5'- cGCGCCGAGGCuGAgGCCAUcaucGCCgACa -3' miRNA: 3'- -UGUGGCUCUG-UUgCGGUAc---UGGaUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 41961 | 0.69 | 0.577827 |
Target: 5'- gGCACCGAcucGACGccggACGCCGUGuCCacgGCg -3' miRNA: 3'- -UGUGGCU---CUGU----UGCGGUACuGGa--UGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 40548 | 0.66 | 0.746041 |
Target: 5'- gACcCCGAGGaauugcGCGCCGUGuucuaucGCCUGCg -3' miRNA: 3'- -UGuGGCUCUgu----UGCGGUAC-------UGGAUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 40163 | 0.67 | 0.714179 |
Target: 5'- gGCGCCGAucuuCGAgGCC--GGCCUGCUg -3' miRNA: 3'- -UGUGGCUcu--GUUgCGGuaCUGGAUGA- -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 39858 | 0.68 | 0.66909 |
Target: 5'- cACGcCCGAG-CAGCGCCG-GGCCgcGCUc -3' miRNA: 3'- -UGU-GGCUCuGUUGCGGUaCUGGa-UGA- -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 39143 | 0.66 | 0.768476 |
Target: 5'- aACAUCGGGGCGcgcgGCGUCuGUGACCa--- -3' miRNA: 3'- -UGUGGCUCUGU----UGCGG-UACUGGauga -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 38718 | 0.66 | 0.778931 |
Target: 5'- gGCGgCGAcGGCAGCGC---GGCCUACa -3' miRNA: 3'- -UGUgGCU-CUGUUGCGguaCUGGAUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 38030 | 0.69 | 0.577828 |
Target: 5'- cGCACCGAG-CAGCGCCucggcGACUUcgGCc -3' miRNA: 3'- -UGUGGCUCuGUUGCGGua---CUGGA--UGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 37843 | 0.72 | 0.389029 |
Target: 5'- aACGCCGAGaACAucGCgGCCGUGGCCg--- -3' miRNA: 3'- -UGUGGCUC-UGU--UG-CGGUACUGGauga -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 37734 | 0.67 | 0.703007 |
Target: 5'- cGCGCUG-GGCAACGaCC-UGACCggGCa -3' miRNA: 3'- -UGUGGCuCUGUUGC-GGuACUGGa-UGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 37589 | 0.7 | 0.52201 |
Target: 5'- gGCGCUGAaagcgGACuGCGCC--GACCUGCUg -3' miRNA: 3'- -UGUGGCU-----CUGuUGCGGuaCUGGAUGA- -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 37290 | 0.68 | 0.623396 |
Target: 5'- -gGCCGGcGACcuggaaaauaucGACGCCGUGGCCgACa -3' miRNA: 3'- ugUGGCU-CUG------------UUGCGGUACUGGaUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 37098 | 0.72 | 0.398464 |
Target: 5'- gGCACCGAGuuGGCGCUAUGGCa---- -3' miRNA: 3'- -UGUGGCUCugUUGCGGUACUGgauga -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 36342 | 1.07 | 0.001663 |
Target: 5'- cACACCGAGACAACGCCAUGACCUACUu -3' miRNA: 3'- -UGUGGCUCUGUUGCGGUACUGGAUGA- -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 35988 | 0.66 | 0.757868 |
Target: 5'- gGCGgCG-GACuACGCCAUGcUCUACg -3' miRNA: 3'- -UGUgGCuCUGuUGCGGUACuGGAUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 35772 | 0.67 | 0.725265 |
Target: 5'- uCGCCGAgGGCAacgacgaaacccGCGCCGUGuCCcugGCUg -3' miRNA: 3'- uGUGGCU-CUGU------------UGCGGUACuGGa--UGA- -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 35572 | 0.66 | 0.778931 |
Target: 5'- uACGCgCGAGAuCAACGCCAaGuCCU-Cg -3' miRNA: 3'- -UGUG-GCUCU-GUUGCGGUaCuGGAuGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 35081 | 0.74 | 0.303039 |
Target: 5'- cGCACgGuAGACAACGCCAUccucggcaACCUGCUg -3' miRNA: 3'- -UGUGgC-UCUGUUGCGGUAc-------UGGAUGA- -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 34829 | 0.68 | 0.646271 |
Target: 5'- gACGCCGGcGCAgaucGCGCCG-GugCUGCa -3' miRNA: 3'- -UGUGGCUcUGU----UGCGGUaCugGAUGa -5' |
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26793 | 5' | -52.9 | NC_005808.1 | + | 34683 | 0.66 | 0.747122 |
Target: 5'- gACGCCGAGcGCAACGagCAgcuggcGAUCUACg -3' miRNA: 3'- -UGUGGCUC-UGUUGCg-GUa-----CUGGAUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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