miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26794 3' -58.8 NC_005808.1 + 1993 0.65 0.480873
Target:  5'- uGCCGUggcugaucuugagGCCCaGGCgc-UCGCUGGCGa -3'
miRNA:   3'- gCGGUA-------------CGGG-CUGauaGGCGACCGCg -5'
26794 3' -58.8 NC_005808.1 + 23233 0.65 0.477839
Target:  5'- gGCCcUGgCCGACcucaacggcaauUCCGCcgccUGGCGCc -3'
miRNA:   3'- gCGGuACgGGCUGau----------AGGCG----ACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 18759 0.66 0.4718
Target:  5'- uCGCC-UGCCUG-CUgGUCaCGCcGGUGCc -3'
miRNA:   3'- -GCGGuACGGGCuGA-UAG-GCGaCCGCG- -5'
26794 3' -58.8 NC_005808.1 + 34406 0.66 0.4718
Target:  5'- gGCCGUGCgCGAUgaaaUCGCcGGCaGCa -3'
miRNA:   3'- gCGGUACGgGCUGaua-GGCGaCCG-CG- -5'
26794 3' -58.8 NC_005808.1 + 35224 0.66 0.4718
Target:  5'- cCGCgGUGCCCG-----CCGCUGGaCGa -3'
miRNA:   3'- -GCGgUACGGGCugauaGGCGACC-GCg -5'
26794 3' -58.8 NC_005808.1 + 36253 0.66 0.4718
Target:  5'- gGCCuucggGCCgGGCgcuUUgGCUGGgGCg -3'
miRNA:   3'- gCGGua---CGGgCUGau-AGgCGACCgCG- -5'
26794 3' -58.8 NC_005808.1 + 37313 0.66 0.468795
Target:  5'- aCGCCGUGgCCGACaacgCCGCgaacaucaacacggUGGC-Cg -3'
miRNA:   3'- -GCGGUACgGGCUGaua-GGCG--------------ACCGcG- -5'
26794 3' -58.8 NC_005808.1 + 24689 0.66 0.461823
Target:  5'- aCGuCCAcGCCCaGGCUGUCCaucGGUGCc -3'
miRNA:   3'- -GC-GGUaCGGG-CUGAUAGGcgaCCGCG- -5'
26794 3' -58.8 NC_005808.1 + 7546 0.66 0.461823
Target:  5'- gCGgCGUGCUCGA---UCUGC-GGCGCc -3'
miRNA:   3'- -GCgGUACGGGCUgauAGGCGaCCGCG- -5'
26794 3' -58.8 NC_005808.1 + 12025 0.66 0.460831
Target:  5'- gGCCGUGgCCGGCgagGUCUugcccaGCgugucgaagucgaUGGCGCc -3'
miRNA:   3'- gCGGUACgGGCUGa--UAGG------CG-------------ACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 30583 0.66 0.451958
Target:  5'- uCGCCG-GCCaCGGCcgcgCUGCUGGC-Cg -3'
miRNA:   3'- -GCGGUaCGG-GCUGaua-GGCGACCGcG- -5'
26794 3' -58.8 NC_005808.1 + 26160 0.66 0.442209
Target:  5'- aCGCCGUGUUCaACg--CCGCcGGCGa -3'
miRNA:   3'- -GCGGUACGGGcUGauaGGCGaCCGCg -5'
26794 3' -58.8 NC_005808.1 + 34019 0.66 0.439307
Target:  5'- uCGCCGUgaccgucgugucgcGCCUGucGCUGcCCGCcaucGGCGCg -3'
miRNA:   3'- -GCGGUA--------------CGGGC--UGAUaGGCGa---CCGCG- -5'
26794 3' -58.8 NC_005808.1 + 7166 0.66 0.43258
Target:  5'- aGCCcagGCCCGACg---CGCUGaCGCc -3'
miRNA:   3'- gCGGua-CGGGCUGauagGCGACcGCG- -5'
26794 3' -58.8 NC_005808.1 + 13777 0.66 0.43258
Target:  5'- gGCCGcaaCCCGACgacggCgCGCUGGCuGCu -3'
miRNA:   3'- gCGGUac-GGGCUGaua--G-GCGACCG-CG- -5'
26794 3' -58.8 NC_005808.1 + 9202 0.67 0.42402
Target:  5'- gGCC-UGCUCGGCggcgcggcgcacguUCUGC-GGCGCg -3'
miRNA:   3'- gCGGuACGGGCUGau------------AGGCGaCCGCG- -5'
26794 3' -58.8 NC_005808.1 + 18104 0.67 0.423075
Target:  5'- gCGCCA-GCCCcuacGACU--UC-CUGGCGCa -3'
miRNA:   3'- -GCGGUaCGGG----CUGAuaGGcGACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 7734 0.67 0.423075
Target:  5'- aCGCUcgGCggCCGGCUugCUGUUGGCGa -3'
miRNA:   3'- -GCGGuaCG--GGCUGAuaGGCGACCGCg -5'
26794 3' -58.8 NC_005808.1 + 17280 0.67 0.423075
Target:  5'- uGCCGUccacGaagCCGGCg--CCGCgGGCGCg -3'
miRNA:   3'- gCGGUA----Cg--GGCUGauaGGCGaCCGCG- -5'
26794 3' -58.8 NC_005808.1 + 36021 0.67 0.423075
Target:  5'- gGCCGUGCUgGGCUAcuuccucaaggaUgCGCUGaCGCc -3'
miRNA:   3'- gCGGUACGGgCUGAU------------AgGCGACcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.