miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26795 5' -58.9 NC_005808.1 + 25618 0.66 0.442642
Target:  5'- cACgGCGgCgCGGUCGCCAGCA-GC-GCg -3'
miRNA:   3'- -UGgCGCaG-GUCGGUGGUCGUuCGaCG- -5'
26795 5' -58.9 NC_005808.1 + 453 0.66 0.442642
Target:  5'- uGCUGCGcggCCAGCUugCGGgc-GCUGUc -3'
miRNA:   3'- -UGGCGCa--GGUCGGugGUCguuCGACG- -5'
26795 5' -58.9 NC_005808.1 + 24202 0.66 0.442642
Target:  5'- cGCCGaCGUggCC-GCCACCGGCGccaucGGCaagGCc -3'
miRNA:   3'- -UGGC-GCA--GGuCGGUGGUCGU-----UCGa--CG- -5'
26795 5' -58.9 NC_005808.1 + 41697 0.66 0.442642
Target:  5'- uGCCGCGgCCGGgaugaaccCCACCAuGCuGGCccUGCu -3'
miRNA:   3'- -UGGCGCaGGUC--------GGUGGU-CGuUCG--ACG- -5'
26795 5' -58.9 NC_005808.1 + 5048 0.66 0.442642
Target:  5'- gAUgGCGUCCugcuugagcacaGGCCG-CGGCAGGUuuUGCg -3'
miRNA:   3'- -UGgCGCAGG------------UCGGUgGUCGUUCG--ACG- -5'
26795 5' -58.9 NC_005808.1 + 40608 0.66 0.442642
Target:  5'- gGCCucaaGaUCAGCCACUGGCAGGUgGCg -3'
miRNA:   3'- -UGGcg--CaGGUCGGUGGUCGUUCGaCG- -5'
26795 5' -58.9 NC_005808.1 + 27835 0.66 0.442642
Target:  5'- cCCGCGguggcgCCGGCCGC--GCc-GCUGCu -3'
miRNA:   3'- uGGCGCa-----GGUCGGUGguCGuuCGACG- -5'
26795 5' -58.9 NC_005808.1 + 24982 0.66 0.442642
Target:  5'- -aCGCGcCCAcCCACCAGCAcaaaGGggGCc -3'
miRNA:   3'- ugGCGCaGGUcGGUGGUCGU----UCgaCG- -5'
26795 5' -58.9 NC_005808.1 + 35175 0.66 0.442642
Target:  5'- aACUGCuggCCGGCCAuCCGGUgcccggcuucAAGCUGg -3'
miRNA:   3'- -UGGCGca-GGUCGGU-GGUCG----------UUCGACg -5'
26795 5' -58.9 NC_005808.1 + 36289 0.66 0.442642
Target:  5'- cGCCGCGUCUuGCacgCACCGGagaUAAGCcccgGCg -3'
miRNA:   3'- -UGGCGCAGGuCG---GUGGUC---GUUCGa---CG- -5'
26795 5' -58.9 NC_005808.1 + 18796 0.66 0.436782
Target:  5'- gGCCGCcaccuuguuggugaUCUGGCgGCgCAGgAAGCUGCg -3'
miRNA:   3'- -UGGCGc-------------AGGUCGgUG-GUCgUUCGACG- -5'
26795 5' -58.9 NC_005808.1 + 188 0.66 0.4329
Target:  5'- uGCCgGCGUCauccccGCCAUCAGCAucauGGUgGCg -3'
miRNA:   3'- -UGG-CGCAGgu----CGGUGGUCGU----UCGaCG- -5'
26795 5' -58.9 NC_005808.1 + 27356 0.66 0.431933
Target:  5'- gGCCGaccucgcagcacuCGUCCAGCCAUuCGGCcAGCa-- -3'
miRNA:   3'- -UGGC-------------GCAGGUCGGUG-GUCGuUCGacg -5'
26795 5' -58.9 NC_005808.1 + 33871 0.66 0.430002
Target:  5'- cGCCGCGcccgCCGGgCACaucuucguguucggCAGCAAuCUGCg -3'
miRNA:   3'- -UGGCGCa---GGUCgGUG--------------GUCGUUcGACG- -5'
26795 5' -58.9 NC_005808.1 + 8038 0.66 0.423284
Target:  5'- gGCCGcCGUCCuuGCCGCCGuccaugacgcGCGcccaggucGCUGCc -3'
miRNA:   3'- -UGGC-GCAGGu-CGGUGGU----------CGUu-------CGACG- -5'
26795 5' -58.9 NC_005808.1 + 31658 0.66 0.423284
Target:  5'- uGCCGCuugGUgggccuacaCCGGCCacaagcACCAGUAAcuGCUGCa -3'
miRNA:   3'- -UGGCG---CA---------GGUCGG------UGGUCGUU--CGACG- -5'
26795 5' -58.9 NC_005808.1 + 4857 0.66 0.423284
Target:  5'- --aGCGgCCAGCUuccaauccucGCCGGCGAGCcacGCa -3'
miRNA:   3'- uggCGCaGGUCGG----------UGGUCGUUCGa--CG- -5'
26795 5' -58.9 NC_005808.1 + 34332 0.66 0.417576
Target:  5'- aGCgUGCGUCagaucgaacaccugGGCCGCUugaagcGCAAGCUGCu -3'
miRNA:   3'- -UG-GCGCAGg-------------UCGGUGGu-----CGUUCGACG- -5'
26795 5' -58.9 NC_005808.1 + 38434 0.66 0.413797
Target:  5'- --gGCGgCCGGCUACCAGaucguGCUGUc -3'
miRNA:   3'- uggCGCaGGUCGGUGGUCguu--CGACG- -5'
26795 5' -58.9 NC_005808.1 + 13765 0.66 0.413797
Target:  5'- uUCGgcaaGUCCGGCCGCaacccgacgaCGGCGcgcuGGCUGCu -3'
miRNA:   3'- uGGCg---CAGGUCGGUG----------GUCGU----UCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.