miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26796 5' -57.1 NC_005808.1 + 31500 0.67 0.488398
Target:  5'- uUGGcCGcaGCCGACaaggUGCUCGCGCg -3'
miRNA:   3'- uACCaGCuaUGGCUGga--GCGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 8834 0.76 0.124039
Target:  5'- -cGGccUUGAUACCGuCCUCGCCgACGUa -3'
miRNA:   3'- uaCC--AGCUAUGGCuGGAGCGGgUGCG- -5'
26796 5' -57.1 NC_005808.1 + 13565 0.76 0.127568
Target:  5'- -cGGUgGGUAUCGACCUgGCCgaaGCGCg -3'
miRNA:   3'- uaCCAgCUAUGGCUGGAgCGGg--UGCG- -5'
26796 5' -57.1 NC_005808.1 + 3637 0.69 0.397644
Target:  5'- gGUGGUaauaGGUuugcguuuacucacGCCaGcACCUCGUCCACGCc -3'
miRNA:   3'- -UACCAg---CUA--------------UGG-C-UGGAGCGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 30735 0.68 0.419087
Target:  5'- cAUGGgCGAUAUUGGCgcggggUUCGCCCAgGCc -3'
miRNA:   3'- -UACCaGCUAUGGCUG------GAGCGGGUgCG- -5'
26796 5' -57.1 NC_005808.1 + 1756 0.72 0.232183
Target:  5'- -cGGUCaugGCCGGCCUgCGCCUGgCGCg -3'
miRNA:   3'- uaCCAGcuaUGGCUGGA-GCGGGU-GCG- -5'
26796 5' -57.1 NC_005808.1 + 5454 0.7 0.307615
Target:  5'- -aGGUCGGUAUCGACCaUCaCgCCGCGg -3'
miRNA:   3'- uaCCAGCUAUGGCUGG-AGcG-GGUGCg -5'
26796 5' -57.1 NC_005808.1 + 24124 0.69 0.382256
Target:  5'- gGUGGaCGAaucgGCCGACgC-CGCCgGCGCc -3'
miRNA:   3'- -UACCaGCUa---UGGCUG-GaGCGGgUGCG- -5'
26796 5' -57.1 NC_005808.1 + 29086 0.67 0.478154
Target:  5'- -cGGaCGGcaaACCGcuuACCUCGCCCaaagGCGCg -3'
miRNA:   3'- uaCCaGCUa--UGGC---UGGAGCGGG----UGCG- -5'
26796 5' -57.1 NC_005808.1 + 616 0.67 0.509187
Target:  5'- -cGG-CGAUGauGGCCUCaGCCUcgGCGCg -3'
miRNA:   3'- uaCCaGCUAUggCUGGAG-CGGG--UGCG- -5'
26796 5' -57.1 NC_005808.1 + 27199 0.66 0.573521
Target:  5'- -cGGUCGu--CCGGCaucuUCGCCggcccgCACGCg -3'
miRNA:   3'- uaCCAGCuauGGCUGg---AGCGG------GUGCG- -5'
26796 5' -57.1 NC_005808.1 + 18027 0.71 0.2782
Target:  5'- -cGGccCGAccgugGCCGGCCUCGCcaucgCCGCGCu -3'
miRNA:   3'- uaCCa-GCUa----UGGCUGGAGCG-----GGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 25513 0.71 0.271205
Target:  5'- -cGGcCGAgaaccgcGCCGGCUUCGCCUucguGCGCg -3'
miRNA:   3'- uaCCaGCUa------UGGCUGGAGCGGG----UGCG- -5'
26796 5' -57.1 NC_005808.1 + 14384 0.68 0.428626
Target:  5'- cGUGGUCGucggcgugGCCGACCUggacaaggCGCCgCACcuGCu -3'
miRNA:   3'- -UACCAGCua------UGGCUGGA--------GCGG-GUG--CG- -5'
26796 5' -57.1 NC_005808.1 + 21980 0.67 0.457991
Target:  5'- -aGGcCGAcACCGACCUgcgaCGCcgCCugGCg -3'
miRNA:   3'- uaCCaGCUaUGGCUGGA----GCG--GGugCG- -5'
26796 5' -57.1 NC_005808.1 + 16793 0.71 0.285337
Target:  5'- -cGGUgcagaucaaCGAUACCGAgCgCGCCgCGCGCa -3'
miRNA:   3'- uaCCA---------GCUAUGGCUgGaGCGG-GUGCG- -5'
26796 5' -57.1 NC_005808.1 + 13960 0.67 0.509187
Target:  5'- cUGGcacugcgCGGgaacugGCCGGCCUCaUCCGCGCc -3'
miRNA:   3'- uACCa------GCUa-----UGGCUGGAGcGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 33811 0.66 0.51972
Target:  5'- -cGG-CGcgGCCGACCcaucgUGCgCCGCGUg -3'
miRNA:   3'- uaCCaGCuaUGGCUGGa----GCG-GGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 18645 0.69 0.37339
Target:  5'- -cGGcaaAUGCCGACCUCGCCgGgCGUg -3'
miRNA:   3'- uaCCagcUAUGGCUGGAGCGGgU-GCG- -5'
26796 5' -57.1 NC_005808.1 + 21133 0.68 0.428626
Target:  5'- cAUGGUCGAgGCCaacauCCUgcCGCCCcCGCc -3'
miRNA:   3'- -UACCAGCUaUGGcu---GGA--GCGGGuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.