miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26796 5' -57.1 NC_005808.1 + 14384 0.68 0.428626
Target:  5'- cGUGGUCGucggcgugGCCGACCUggacaaggCGCCgCACcuGCu -3'
miRNA:   3'- -UACCAGCua------UGGCUGGA--------GCGG-GUG--CG- -5'
26796 5' -57.1 NC_005808.1 + 24124 0.69 0.382256
Target:  5'- gGUGGaCGAaucgGCCGACgC-CGCCgGCGCc -3'
miRNA:   3'- -UACCaGCUa---UGGCUG-GaGCGGgUGCG- -5'
26796 5' -57.1 NC_005808.1 + 17636 0.66 0.530338
Target:  5'- -cGcGUCGAguaCGACUUCGaCCC-CGCg -3'
miRNA:   3'- uaC-CAGCUaugGCUGGAGC-GGGuGCG- -5'
26796 5' -57.1 NC_005808.1 + 5454 0.7 0.307615
Target:  5'- -aGGUCGGUAUCGACCaUCaCgCCGCGg -3'
miRNA:   3'- uaCCAGCUAUGGCUGG-AGcG-GGUGCg -5'
26796 5' -57.1 NC_005808.1 + 14839 0.79 0.085733
Target:  5'- -aGGUCGAUGCCGuuggcgGCCagCGCCgCACGCu -3'
miRNA:   3'- uaCCAGCUAUGGC------UGGa-GCGG-GUGCG- -5'
26796 5' -57.1 NC_005808.1 + 28662 0.74 0.168286
Target:  5'- -aGaUCGGUGCCGgcgGCCUCGCCaGCGCg -3'
miRNA:   3'- uaCcAGCUAUGGC---UGGAGCGGgUGCG- -5'
26796 5' -57.1 NC_005808.1 + 21327 0.74 0.177718
Target:  5'- -gGGcUUGAUGCCGGCCaccgCGCCCAgGUu -3'
miRNA:   3'- uaCC-AGCUAUGGCUGGa---GCGGGUgCG- -5'
26796 5' -57.1 NC_005808.1 + 28160 0.74 0.182609
Target:  5'- gGUGGUCag-AUCGACCacgccgUUGCCCACGCc -3'
miRNA:   3'- -UACCAGcuaUGGCUGG------AGCGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 17613 0.71 0.2782
Target:  5'- --uGUCGAUACCGGCCUCGauguuugCCGCa- -3'
miRNA:   3'- uacCAGCUAUGGCUGGAGCg------GGUGcg -5'
26796 5' -57.1 NC_005808.1 + 17840 0.71 0.2782
Target:  5'- -gGGUUGAUGCCcGCCaccguggccucgUCGCCCAgGUa -3'
miRNA:   3'- uaCCAGCUAUGGcUGG------------AGCGGGUgCG- -5'
26796 5' -57.1 NC_005808.1 + 28483 0.67 0.472058
Target:  5'- aGUGGUCGAgcauccgcucggcauUGCCGAaCUCggucaucuGCCgGCGCu -3'
miRNA:   3'- -UACCAGCU---------------AUGGCUgGAG--------CGGgUGCG- -5'
26796 5' -57.1 NC_005808.1 + 28710 0.67 0.468017
Target:  5'- -aGGUCGAUGCUG-UCg-GCgCACGCg -3'
miRNA:   3'- uaCCAGCUAUGGCuGGagCGgGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 41322 0.67 0.468017
Target:  5'- -gGGUCGcuggccgggaAUACCGGCgCUCGCCgGacgGCg -3'
miRNA:   3'- uaCCAGC----------UAUGGCUG-GAGCGGgUg--CG- -5'
26796 5' -57.1 NC_005808.1 + 10850 0.67 0.457991
Target:  5'- gGUGGUCGAgcagGCCcugcguGGCUUCGgUCgGCGCg -3'
miRNA:   3'- -UACCAGCUa---UGG------CUGGAGC-GGgUGCG- -5'
26796 5' -57.1 NC_005808.1 + 11205 0.68 0.409678
Target:  5'- -cGGUCaAUGCCgcgcauGACCgccacguuccCGCCCACGCc -3'
miRNA:   3'- uaCCAGcUAUGG------CUGGa---------GCGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 35601 0.68 0.409678
Target:  5'- ----gCGA-GCCGACC-CGCUCGCGCg -3'
miRNA:   3'- uaccaGCUaUGGCUGGaGCGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 32119 0.69 0.39126
Target:  5'- cUGGcCGcUGCCGACCUcgaCGCCCcCGa -3'
miRNA:   3'- uACCaGCuAUGGCUGGA---GCGGGuGCg -5'
26796 5' -57.1 NC_005808.1 + 10111 0.69 0.39126
Target:  5'- -aGGUCGGUaguGCCuGuCCUCGUaccggCCACGCc -3'
miRNA:   3'- uaCCAGCUA---UGG-CuGGAGCG-----GGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 24722 0.71 0.292618
Target:  5'- -cGGUCGG-GCCGcuuccACCgCGCCUGCGCg -3'
miRNA:   3'- uaCCAGCUaUGGC-----UGGaGCGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 25300 0.7 0.31533
Target:  5'- -aGGUCGugcgGCCGGCCcUGCCaccgGCGCu -3'
miRNA:   3'- uaCCAGCua--UGGCUGGaGCGGg---UGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.