Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26796 | 5' | -57.1 | NC_005808.1 | + | 14384 | 0.68 | 0.428626 |
Target: 5'- cGUGGUCGucggcgugGCCGACCUggacaaggCGCCgCACcuGCu -3' miRNA: 3'- -UACCAGCua------UGGCUGGA--------GCGG-GUG--CG- -5' |
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26796 | 5' | -57.1 | NC_005808.1 | + | 24124 | 0.69 | 0.382256 |
Target: 5'- gGUGGaCGAaucgGCCGACgC-CGCCgGCGCc -3' miRNA: 3'- -UACCaGCUa---UGGCUG-GaGCGGgUGCG- -5' |
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26796 | 5' | -57.1 | NC_005808.1 | + | 17636 | 0.66 | 0.530338 |
Target: 5'- -cGcGUCGAguaCGACUUCGaCCC-CGCg -3' miRNA: 3'- uaC-CAGCUaugGCUGGAGC-GGGuGCG- -5' |
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26796 | 5' | -57.1 | NC_005808.1 | + | 5454 | 0.7 | 0.307615 |
Target: 5'- -aGGUCGGUAUCGACCaUCaCgCCGCGg -3' miRNA: 3'- uaCCAGCUAUGGCUGG-AGcG-GGUGCg -5' |
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26796 | 5' | -57.1 | NC_005808.1 | + | 14839 | 0.79 | 0.085733 |
Target: 5'- -aGGUCGAUGCCGuuggcgGCCagCGCCgCACGCu -3' miRNA: 3'- uaCCAGCUAUGGC------UGGa-GCGG-GUGCG- -5' |
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26796 | 5' | -57.1 | NC_005808.1 | + | 28662 | 0.74 | 0.168286 |
Target: 5'- -aGaUCGGUGCCGgcgGCCUCGCCaGCGCg -3' miRNA: 3'- uaCcAGCUAUGGC---UGGAGCGGgUGCG- -5' |
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26796 | 5' | -57.1 | NC_005808.1 | + | 21327 | 0.74 | 0.177718 |
Target: 5'- -gGGcUUGAUGCCGGCCaccgCGCCCAgGUu -3' miRNA: 3'- uaCC-AGCUAUGGCUGGa---GCGGGUgCG- -5' |
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26796 | 5' | -57.1 | NC_005808.1 | + | 28160 | 0.74 | 0.182609 |
Target: 5'- gGUGGUCag-AUCGACCacgccgUUGCCCACGCc -3' miRNA: 3'- -UACCAGcuaUGGCUGG------AGCGGGUGCG- -5' |
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26796 | 5' | -57.1 | NC_005808.1 | + | 17613 | 0.71 | 0.2782 |
Target: 5'- --uGUCGAUACCGGCCUCGauguuugCCGCa- -3' miRNA: 3'- uacCAGCUAUGGCUGGAGCg------GGUGcg -5' |
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26796 | 5' | -57.1 | NC_005808.1 | + | 17840 | 0.71 | 0.2782 |
Target: 5'- -gGGUUGAUGCCcGCCaccguggccucgUCGCCCAgGUa -3' miRNA: 3'- uaCCAGCUAUGGcUGG------------AGCGGGUgCG- -5' |
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26796 | 5' | -57.1 | NC_005808.1 | + | 28483 | 0.67 | 0.472058 |
Target: 5'- aGUGGUCGAgcauccgcucggcauUGCCGAaCUCggucaucuGCCgGCGCu -3' miRNA: 3'- -UACCAGCU---------------AUGGCUgGAG--------CGGgUGCG- -5' |
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26796 | 5' | -57.1 | NC_005808.1 | + | 28710 | 0.67 | 0.468017 |
Target: 5'- -aGGUCGAUGCUG-UCg-GCgCACGCg -3' miRNA: 3'- uaCCAGCUAUGGCuGGagCGgGUGCG- -5' |
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26796 | 5' | -57.1 | NC_005808.1 | + | 41322 | 0.67 | 0.468017 |
Target: 5'- -gGGUCGcuggccgggaAUACCGGCgCUCGCCgGacgGCg -3' miRNA: 3'- uaCCAGC----------UAUGGCUG-GAGCGGgUg--CG- -5' |
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26796 | 5' | -57.1 | NC_005808.1 | + | 10850 | 0.67 | 0.457991 |
Target: 5'- gGUGGUCGAgcagGCCcugcguGGCUUCGgUCgGCGCg -3' miRNA: 3'- -UACCAGCUa---UGG------CUGGAGC-GGgUGCG- -5' |
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26796 | 5' | -57.1 | NC_005808.1 | + | 11205 | 0.68 | 0.409678 |
Target: 5'- -cGGUCaAUGCCgcgcauGACCgccacguuccCGCCCACGCc -3' miRNA: 3'- uaCCAGcUAUGG------CUGGa---------GCGGGUGCG- -5' |
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26796 | 5' | -57.1 | NC_005808.1 | + | 35601 | 0.68 | 0.409678 |
Target: 5'- ----gCGA-GCCGACC-CGCUCGCGCg -3' miRNA: 3'- uaccaGCUaUGGCUGGaGCGGGUGCG- -5' |
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26796 | 5' | -57.1 | NC_005808.1 | + | 32119 | 0.69 | 0.39126 |
Target: 5'- cUGGcCGcUGCCGACCUcgaCGCCCcCGa -3' miRNA: 3'- uACCaGCuAUGGCUGGA---GCGGGuGCg -5' |
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26796 | 5' | -57.1 | NC_005808.1 | + | 10111 | 0.69 | 0.39126 |
Target: 5'- -aGGUCGGUaguGCCuGuCCUCGUaccggCCACGCc -3' miRNA: 3'- uaCCAGCUA---UGG-CuGGAGCG-----GGUGCG- -5' |
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26796 | 5' | -57.1 | NC_005808.1 | + | 24722 | 0.71 | 0.292618 |
Target: 5'- -cGGUCGG-GCCGcuuccACCgCGCCUGCGCg -3' miRNA: 3'- uaCCAGCUaUGGC-----UGGaGCGGGUGCG- -5' |
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26796 | 5' | -57.1 | NC_005808.1 | + | 25300 | 0.7 | 0.31533 |
Target: 5'- -aGGUCGugcgGCCGGCCcUGCCaccgGCGCu -3' miRNA: 3'- uaCCAGCua--UGGCUGGaGCGGg---UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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