Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26797 | 5' | -58.3 | NC_005808.1 | + | 29862 | 0.67 | 0.355928 |
Target: 5'- cGUCUGGgcGCGGcacCCAGCACCaacggGCCGg -3' miRNA: 3'- aUAGGCCaaCGUCc--GGUCGUGG-----UGGU- -5' |
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26797 | 5' | -58.3 | NC_005808.1 | + | 30316 | 0.67 | 0.355928 |
Target: 5'- --gCCGGcacGCuGGGCCAGCAacCCGCCc -3' miRNA: 3'- auaGGCCaa-CG-UCCGGUCGU--GGUGGu -5' |
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26797 | 5' | -58.3 | NC_005808.1 | + | 37390 | 1.07 | 0.000397 |
Target: 5'- gUAUCCGGUUGCAGGCCAGCACCACCAg -3' miRNA: 3'- -AUAGGCCAACGUCCGGUCGUGGUGGU- -5' |
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26797 | 5' | -58.3 | NC_005808.1 | + | 40843 | 0.68 | 0.299124 |
Target: 5'- --gCCaGgcGCAGGCCGGCcaugACCGCCc -3' miRNA: 3'- auaGGcCaaCGUCCGGUCG----UGGUGGu -5' |
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26797 | 5' | -58.3 | NC_005808.1 | + | 41316 | 0.66 | 0.400922 |
Target: 5'- ---gCGG-UGUGGGCgGGCAUCACCu -3' miRNA: 3'- auagGCCaACGUCCGgUCGUGGUGGu -5' |
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26797 | 5' | -58.3 | NC_005808.1 | + | 41906 | 0.74 | 0.129055 |
Target: 5'- gUAUCuUGGgcGCccGGCCGGCGCCGCCGu -3' miRNA: 3'- -AUAG-GCCaaCGu-CCGGUCGUGGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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