Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26798 | 3' | -54.2 | NC_005808.1 | + | 35286 | 0.79 | 0.132591 |
Target: 5'- uGCGUUcGCAGaccaUCGACGGCGCCAuCCg -3' miRNA: 3'- gUGCAA-CGUCa---AGUUGCCGCGGUcGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 25660 | 0.69 | 0.538503 |
Target: 5'- gCACGcUGC---UgGACGGCGCCGuGCCc -3' miRNA: 3'- -GUGCaACGucaAgUUGCCGCGGU-CGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 12607 | 0.69 | 0.538503 |
Target: 5'- gCACGaugGCccGUUCGACGGCuGCauccaGGCCg -3' miRNA: 3'- -GUGCaa-CGu-CAAGUUGCCG-CGg----UCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 39048 | 0.66 | 0.717886 |
Target: 5'- cCGCuGcUGCGcuGUUCGGCGGCaGCUGGCa -3' miRNA: 3'- -GUG-CaACGU--CAAGUUGCCG-CGGUCGg -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 6197 | 0.74 | 0.27862 |
Target: 5'- aGCGuUUGCAGgu-GACGGCGCgCGGCUc -3' miRNA: 3'- gUGC-AACGUCaagUUGCCGCG-GUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 2825 | 0.73 | 0.285947 |
Target: 5'- cCAgGUgcucGCGGccacgcgCAGCGGCGCCAGCa -3' miRNA: 3'- -GUgCAa---CGUCaa-----GUUGCCGCGGUCGg -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 5072 | 0.71 | 0.384799 |
Target: 5'- cCGCGgcagguuUUGCGGUUgGAacaGGCgGCCGGCCc -3' miRNA: 3'- -GUGC-------AACGUCAAgUUg--CCG-CGGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 41599 | 0.71 | 0.385719 |
Target: 5'- gACGcUGCGGUgaaCcACGGCaCCGGCCa -3' miRNA: 3'- gUGCaACGUCAa--GuUGCCGcGGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 9860 | 0.71 | 0.414008 |
Target: 5'- cUugGUggggGCGG-UC-AUGGCGUCAGCCc -3' miRNA: 3'- -GugCAa---CGUCaAGuUGCCGCGGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 14749 | 0.69 | 0.527557 |
Target: 5'- aCACGUUcuugagcaGCGGcgCGGcCGGCGCCA-CCg -3' miRNA: 3'- -GUGCAA--------CGUCaaGUU-GCCGCGGUcGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 32264 | 0.7 | 0.474217 |
Target: 5'- aCACGccGCAG--CGACGGCuaCGGCCu -3' miRNA: 3'- -GUGCaaCGUCaaGUUGCCGcgGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 33402 | 0.71 | 0.395007 |
Target: 5'- cCGCGccgccgaGCAGgccaacgUCGACGGCGCCAaguugucgcuGCCg -3' miRNA: 3'- -GUGCaa-----CGUCa------AGUUGCCGCGGU----------CGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 21849 | 0.78 | 0.144446 |
Target: 5'- gCGCGgcGCAGcgCcucuACGGCGCCAGCa -3' miRNA: 3'- -GUGCaaCGUCaaGu---UGCCGCGGUCGg -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 28272 | 0.69 | 0.505924 |
Target: 5'- gGCccgGCAGUUCAgccaagGCGcGCGCCAGUUc -3' miRNA: 3'- gUGcaaCGUCAAGU------UGC-CGCGGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 1851 | 0.74 | 0.271442 |
Target: 5'- gAUGUUGCcgccgucuugcaGGUUCAGCccguggccGGCGCUGGCCg -3' miRNA: 3'- gUGCAACG------------UCAAGUUG--------CCGCGGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 15325 | 0.71 | 0.389417 |
Target: 5'- gCGCGgcgaacUGCGGUUCAuugccucggccaagaGCcuggGGCGCCGGCUg -3' miRNA: 3'- -GUGCa-----ACGUCAAGU---------------UG----CCGCGGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 31537 | 0.69 | 0.516695 |
Target: 5'- aCACGUUcgaGCAGUUCGucgccaauGCGGCcGagaaCGGCCc -3' miRNA: 3'- -GUGCAA---CGUCAAGU--------UGCCG-Cg---GUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 38306 | 0.69 | 0.538503 |
Target: 5'- gCugG-UGCAGUUCAccgccgacACGGCcaucaccauGCCGGCg -3' miRNA: 3'- -GugCaACGUCAAGU--------UGCCG---------CGGUCGg -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 12462 | 0.74 | 0.271442 |
Target: 5'- aCGCGgUGCAGgcCGGCGGCGUguucuggcgCGGCCu -3' miRNA: 3'- -GUGCaACGUCaaGUUGCCGCG---------GUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 18088 | 0.72 | 0.350042 |
Target: 5'- gACGUgauCGG--CGugGGCGCCAGCCc -3' miRNA: 3'- gUGCAac-GUCaaGUugCCGCGGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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