miRNA display CGI


Results 21 - 40 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26798 3' -54.2 NC_005808.1 + 12607 0.69 0.538503
Target:  5'- gCACGaugGCccGUUCGACGGCuGCauccaGGCCg -3'
miRNA:   3'- -GUGCaa-CGu-CAAGUUGCCG-CGg----UCGG- -5'
26798 3' -54.2 NC_005808.1 + 12462 0.74 0.271442
Target:  5'- aCGCGgUGCAGgcCGGCGGCGUguucuggcgCGGCCu -3'
miRNA:   3'- -GUGCaACGUCaaGUUGCCGCG---------GUCGG- -5'
26798 3' -54.2 NC_005808.1 + 22665 0.66 0.695743
Target:  5'- cCACGgccgacaaGgAGUUCGGCGGCGacaAGCUg -3'
miRNA:   3'- -GUGCaa------CgUCAAGUUGCCGCgg-UCGG- -5'
26798 3' -54.2 NC_005808.1 + 8113 0.66 0.66207
Target:  5'- gCACGUgcucgGCcauUUCGGCGGUGacuucCCAGCCc -3'
miRNA:   3'- -GUGCAa----CGuc-AAGUUGCCGC-----GGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 25660 0.69 0.538503
Target:  5'- gCACGcUGC---UgGACGGCGCCGuGCCc -3'
miRNA:   3'- -GUGCaACGucaAgUUGCCGCGGU-CGG- -5'
26798 3' -54.2 NC_005808.1 + 1851 0.74 0.271442
Target:  5'- gAUGUUGCcgccgucuugcaGGUUCAGCccguggccGGCGCUGGCCg -3'
miRNA:   3'- gUGCAACG------------UCAAGUUG--------CCGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 41536 0.67 0.64964
Target:  5'- gCGCGUUacuggacGcCGGUUC-GCGGCgacaugcugccGCCGGCCg -3'
miRNA:   3'- -GUGCAA-------C-GUCAAGuUGCCG-----------CGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 21849 0.78 0.144446
Target:  5'- gCGCGgcGCAGcgCcucuACGGCGCCAGCa -3'
miRNA:   3'- -GUGCaaCGUCaaGu---UGCCGCGGUCGg -5'
26798 3' -54.2 NC_005808.1 + 35286 0.79 0.132591
Target:  5'- uGCGUUcGCAGaccaUCGACGGCGCCAuCCg -3'
miRNA:   3'- gUGCAA-CGUCa---AGUUGCCGCGGUcGG- -5'
26798 3' -54.2 NC_005808.1 + 33402 0.71 0.395007
Target:  5'- cCGCGccgccgaGCAGgccaacgUCGACGGCGCCAaguugucgcuGCCg -3'
miRNA:   3'- -GUGCaa-----CGUCa------AGUUGCCGCGGU----------CGG- -5'
26798 3' -54.2 NC_005808.1 + 38306 0.69 0.538503
Target:  5'- gCugG-UGCAGUUCAccgccgacACGGCcaucaccauGCCGGCg -3'
miRNA:   3'- -GugCaACGUCAAGU--------UGCCG---------CGGUCGg -5'
26798 3' -54.2 NC_005808.1 + 26155 0.67 0.62813
Target:  5'- cUACGacGCcguGUUCAACGcCGCCGGCg -3'
miRNA:   3'- -GUGCaaCGu--CAAGUUGCcGCGGUCGg -5'
26798 3' -54.2 NC_005808.1 + 28272 0.69 0.505924
Target:  5'- gGCccgGCAGUUCAgccaagGCGcGCGCCAGUUc -3'
miRNA:   3'- gUGcaaCGUCAAGU------UGC-CGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 9860 0.71 0.414008
Target:  5'- cUugGUggggGCGG-UC-AUGGCGUCAGCCc -3'
miRNA:   3'- -GugCAa---CGUCaAGuUGCCGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 5072 0.71 0.384799
Target:  5'- cCGCGgcagguuUUGCGGUUgGAacaGGCgGCCGGCCc -3'
miRNA:   3'- -GUGC-------AACGUCAAgUUg--CCG-CGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 6197 0.74 0.27862
Target:  5'- aGCGuUUGCAGgu-GACGGCGCgCGGCUc -3'
miRNA:   3'- gUGC-AACGUCaagUUGCCGCG-GUCGG- -5'
26798 3' -54.2 NC_005808.1 + 37006 0.66 0.717886
Target:  5'- aACGagGCGGacaUCGacACGGUGgCGGCCa -3'
miRNA:   3'- gUGCaaCGUCa--AGU--UGCCGCgGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 20711 0.66 0.706853
Target:  5'- aAUGgaaGCcuuGggCGACGuGCGCCAGCUa -3'
miRNA:   3'- gUGCaa-CGu--CaaGUUGC-CGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 10264 0.66 0.684568
Target:  5'- cCugGgcgGCGGUUgu-CGGgaCGCCGGCCu -3'
miRNA:   3'- -GugCaa-CGUCAAguuGCC--GCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 40241 0.66 0.66207
Target:  5'- cCACG-UGCAGgcCGaauuGCGGCGCaCGcgcGCCa -3'
miRNA:   3'- -GUGCaACGUCaaGU----UGCCGCG-GU---CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.