miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26798 3' -54.2 NC_005808.1 + 42258 0.66 0.684568
Target:  5'- gACGgccUGCuGcgCGACGccacCGCCAGCCu -3'
miRNA:   3'- gUGCa--ACGuCaaGUUGCc---GCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 23539 0.66 0.684568
Target:  5'- gGCGcacGCGG-UCGAUGGCcUCGGCCg -3'
miRNA:   3'- gUGCaa-CGUCaAGUUGCCGcGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 25388 0.66 0.684568
Target:  5'- cCGCGUccUGCAacgcuccUUCGGCGGCGgcgaaaUCAGCCc -3'
miRNA:   3'- -GUGCA--ACGUc------AAGUUGCCGC------GGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 7245 0.66 0.66207
Target:  5'- cCACuGgcGCGGgcCGAUGuCGCCGGCCu -3'
miRNA:   3'- -GUG-CaaCGUCaaGUUGCcGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 40241 0.66 0.66207
Target:  5'- cCACG-UGCAGgcCGaauuGCGGCGCaCGcgcGCCa -3'
miRNA:   3'- -GUGCaACGUCaaGU----UGCCGCG-GU---CGG- -5'
26798 3' -54.2 NC_005808.1 + 13410 0.66 0.66207
Target:  5'- gCAuCGUUGCGGUaacgguucUCGucccACGGCaggcccGCCAGCUu -3'
miRNA:   3'- -GU-GCAACGUCA--------AGU----UGCCG------CGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 8113 0.66 0.66207
Target:  5'- gCACGUgcucgGCcauUUCGGCGGUGacuucCCAGCCc -3'
miRNA:   3'- -GUGCAa----CGuc-AAGUUGCCGC-----GGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 7759 0.66 0.66207
Target:  5'- aGCGaUUGCAGcacCGGCGcgaucuGCGCCGGCg -3'
miRNA:   3'- gUGC-AACGUCaa-GUUGC------CGCGGUCGg -5'
26798 3' -54.2 NC_005808.1 + 34822 0.66 0.66207
Target:  5'- uCGCcucGCAGggCGAaGGCGCgAGCCu -3'
miRNA:   3'- -GUGcaaCGUCaaGUUgCCGCGgUCGG- -5'
26798 3' -54.2 NC_005808.1 + 25597 0.67 0.650772
Target:  5'- uGCGgcccagGCAGUggCAaccacggcggcGCGGuCGCCAGCa -3'
miRNA:   3'- gUGCaa----CGUCAa-GU-----------UGCC-GCGGUCGg -5'
26798 3' -54.2 NC_005808.1 + 41536 0.67 0.64964
Target:  5'- gCGCGUUacuggacGcCGGUUC-GCGGCgacaugcugccGCCGGCCg -3'
miRNA:   3'- -GUGCAA-------C-GUCAAGuUGCCG-----------CGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 42484 0.67 0.639454
Target:  5'- aCGCGaaGUGGUUgGACGGCGCgCAGa- -3'
miRNA:   3'- -GUGCaaCGUCAAgUUGCCGCG-GUCgg -5'
26798 3' -54.2 NC_005808.1 + 23627 0.67 0.639454
Target:  5'- aACG-UGCGGUUgGuuucGCGGUaGCCGGCg -3'
miRNA:   3'- gUGCaACGUCAAgU----UGCCG-CGGUCGg -5'
26798 3' -54.2 NC_005808.1 + 5562 0.67 0.639454
Target:  5'- cCACG--GUA--UCGACGGCGCCaacgcuGGCCg -3'
miRNA:   3'- -GUGCaaCGUcaAGUUGCCGCGG------UCGG- -5'
26798 3' -54.2 NC_005808.1 + 5428 0.67 0.639454
Target:  5'- cCACGgcGCGGau-GGCGGCGUgGGCg -3'
miRNA:   3'- -GUGCaaCGUCaagUUGCCGCGgUCGg -5'
26798 3' -54.2 NC_005808.1 + 15442 0.67 0.639454
Target:  5'- cCGCG-UGCGGcgcgugggggacUUCGagugaugcgcGCGGCGUCAGCUu -3'
miRNA:   3'- -GUGCaACGUC------------AAGU----------UGCCGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 8632 0.67 0.62813
Target:  5'- -cCGcUGCGGUggCGA-GGuCGCCGGCCu -3'
miRNA:   3'- guGCaACGUCAa-GUUgCC-GCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 26155 0.67 0.62813
Target:  5'- cUACGacGCcguGUUCAACGcCGCCGGCg -3'
miRNA:   3'- -GUGCaaCGu--CAAGUUGCcGCGGUCGg -5'
26798 3' -54.2 NC_005808.1 + 28186 0.67 0.61681
Target:  5'- cCACGcccaGCAGgu--GCGGCGCCuuguccaggucGGCCa -3'
miRNA:   3'- -GUGCaa--CGUCaaguUGCCGCGG-----------UCGG- -5'
26798 3' -54.2 NC_005808.1 + 30155 0.67 0.614548
Target:  5'- cCGCGUcggacaucagcgGCAGU----UGGCGCCAGUCg -3'
miRNA:   3'- -GUGCAa-----------CGUCAaguuGCCGCGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.