Results 41 - 60 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26798 | 3' | -54.2 | NC_005808.1 | + | 37757 | 0.67 | 0.605504 |
Target: 5'- gCugGccGCuuuccGUgaauucgaCGACGGCGCCGGCCc -3' miRNA: 3'- -GugCaaCGu----CAa-------GUUGCCGCGGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 28648 | 0.68 | 0.594222 |
Target: 5'- cCGCGc-GCAGUgccaGAuCGGUGCCGGCg -3' miRNA: 3'- -GUGCaaCGUCAag--UU-GCCGCGGUCGg -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 8784 | 0.68 | 0.594222 |
Target: 5'- aCGCGgcGCAcgaugggUCGGCcGCGCCGGUCa -3' miRNA: 3'- -GUGCaaCGUca-----AGUUGcCGCGGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 38202 | 0.68 | 0.594222 |
Target: 5'- gCACGcucaagGCccGGcgCGACGGCGCCuGGCUg -3' miRNA: 3'- -GUGCaa----CG--UCaaGUUGCCGCGG-UCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 24162 | 0.68 | 0.594222 |
Target: 5'- uCACGUuuucggUGCAGgacUCGGCGGacaaCGCCAccuucGCCg -3' miRNA: 3'- -GUGCA------ACGUCa--AGUUGCC----GCGGU-----CGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 9938 | 0.68 | 0.582974 |
Target: 5'- uCACGUcggGCAGcUUC-GCGGCGCCGa-- -3' miRNA: 3'- -GUGCAa--CGUC-AAGuUGCCGCGGUcgg -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 13316 | 0.68 | 0.582974 |
Target: 5'- gGCGUUGUAGgcggcguaggcuUUCGGCaGGuCGCC-GCCg -3' miRNA: 3'- gUGCAACGUC------------AAGUUG-CC-GCGGuCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 2230 | 0.68 | 0.582974 |
Target: 5'- cCACGc-GCAGca-GGCGGCGCgUGGCCg -3' miRNA: 3'- -GUGCaaCGUCaagUUGCCGCG-GUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 13792 | 0.68 | 0.582974 |
Target: 5'- gCGCGUUGCuGgUCAGuuUGcGCGCCuguGCCu -3' miRNA: 3'- -GUGCAACGuCaAGUU--GC-CGCGGu--CGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 24693 | 0.68 | 0.582974 |
Target: 5'- cCACGcccagGCuGUcCAuCGGUGCCAGUCg -3' miRNA: 3'- -GUGCaa---CGuCAaGUuGCCGCGGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 4247 | 0.68 | 0.57177 |
Target: 5'- gAUGgcGUAGU----CGGUGCCGGCCg -3' miRNA: 3'- gUGCaaCGUCAaguuGCCGCGGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 4361 | 0.68 | 0.57177 |
Target: 5'- uGCGUUGcCGGUgcgcgugaaggCGACGGCcgacuuGUCGGCCu -3' miRNA: 3'- gUGCAAC-GUCAa----------GUUGCCG------CGGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 10941 | 0.68 | 0.560617 |
Target: 5'- gGCcucggGCAGUUgcGCGGCGaCAGCCg -3' miRNA: 3'- gUGcaa--CGUCAAguUGCCGCgGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 18834 | 0.68 | 0.549525 |
Target: 5'- cCGCGgcGCA--UCGGCccgguGGCGCCGGCa -3' miRNA: 3'- -GUGCaaCGUcaAGUUG-----CCGCGGUCGg -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 12607 | 0.69 | 0.538503 |
Target: 5'- gCACGaugGCccGUUCGACGGCuGCauccaGGCCg -3' miRNA: 3'- -GUGCaa-CGu-CAAGUUGCCG-CGg----UCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 38306 | 0.69 | 0.538503 |
Target: 5'- gCugG-UGCAGUUCAccgccgacACGGCcaucaccauGCCGGCg -3' miRNA: 3'- -GugCaACGUCAAGU--------UGCCG---------CGGUCGg -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 33176 | 0.69 | 0.538503 |
Target: 5'- --aGUUGCGGaa-GugGGCGCCcucggcacGGCCa -3' miRNA: 3'- gugCAACGUCaagUugCCGCGG--------UCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 25660 | 0.69 | 0.538503 |
Target: 5'- gCACGcUGC---UgGACGGCGCCGuGCCc -3' miRNA: 3'- -GUGCaACGucaAgUUGCCGCGGU-CGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 22045 | 0.69 | 0.527557 |
Target: 5'- cCAUGUUGCGGUcgucgcgcuugcUCGGgucgcgguCGGCGCgCGGCUc -3' miRNA: 3'- -GUGCAACGUCA------------AGUU--------GCCGCG-GUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 14749 | 0.69 | 0.527557 |
Target: 5'- aCACGUUcuugagcaGCGGcgCGGcCGGCGCCA-CCg -3' miRNA: 3'- -GUGCAA--------CGUCaaGUU-GCCGCGGUcGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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