miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26798 5' -62.1 NC_005808.1 + 38548 0.67 0.255151
Target:  5'- cUGGGCCGcUgGCCUGccgCUcGCCGCGg -3'
miRNA:   3'- -ACCCGGCcGgCGGACaa-GGuUGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 37511 1.08 0.000176
Target:  5'- cUGGGCCGGCCGCCUGUUCCAACCGCAa -3'
miRNA:   3'- -ACCCGGCCGGCGGACAAGGUUGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 37444 0.7 0.156887
Target:  5'- aGGGCgugagcagcgaCGGCCGCCUgcgcggcacguugcaGUUcaacggcgCCAGCCGCAc -3'
miRNA:   3'- aCCCG-----------GCCGGCGGA---------------CAA--------GGUUGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 36244 0.66 0.296223
Target:  5'- gUGGGCCGGuUCGCCac--CCAGaCGCAc -3'
miRNA:   3'- -ACCCGGCC-GGCGGacaaGGUUgGCGU- -5'
26798 5' -62.1 NC_005808.1 + 36213 0.78 0.041569
Target:  5'- cGGGCCGGCCgGCCUGcgCCugauuGCCGaCGu -3'
miRNA:   3'- aCCCGGCCGG-CGGACaaGGu----UGGC-GU- -5'
26798 5' -62.1 NC_005808.1 + 34904 0.66 0.303548
Target:  5'- cGGcaaGCCGGCCGCCgaggUCaAGCCGaCGa -3'
miRNA:   3'- aCC---CGGCCGGCGGaca-AGgUUGGC-GU- -5'
26798 5' -62.1 NC_005808.1 + 34378 0.66 0.303548
Target:  5'- aGGGCaCGGCCGCgcacGaaCUGGCCGCc -3'
miRNA:   3'- aCCCG-GCCGGCGga--CaaGGUUGGCGu -5'
26798 5' -62.1 NC_005808.1 + 31694 0.66 0.289036
Target:  5'- cGGGCaGGUCGCCa-UUCCGguggaggaauacGCCGCGc -3'
miRNA:   3'- aCCCGgCCGGCGGacAAGGU------------UGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 30772 0.73 0.094662
Target:  5'- cGcGGCgCGGCCgGUCUGUUCCAGuCCGUc -3'
miRNA:   3'- aC-CCG-GCCGG-CGGACAAGGUU-GGCGu -5'
26798 5' -62.1 NC_005808.1 + 29678 0.66 0.318614
Target:  5'- aGGGCgCGGCCGUgUGUUUgaaAAUCGgAa -3'
miRNA:   3'- aCCCG-GCCGGCGgACAAGg--UUGGCgU- -5'
26798 5' -62.1 NC_005808.1 + 28666 0.67 0.242537
Target:  5'- cGGuGCCGGCgGCCUcg-CCAG-CGCGg -3'
miRNA:   3'- aCC-CGGCCGgCGGAcaaGGUUgGCGU- -5'
26798 5' -62.1 NC_005808.1 + 24508 0.66 0.303548
Target:  5'- gGGGCUGGCgcccaCGCCgaucacgUCCAgguggaugACCGCGu -3'
miRNA:   3'- aCCCGGCCG-----GCGGaca----AGGU--------UGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 23744 0.7 0.168219
Target:  5'- gUGGGCaugGGCCGCCcgGccUUCUAcauGCCGCGc -3'
miRNA:   3'- -ACCCGg--CCGGCGGa-C--AAGGU---UGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 22797 0.66 0.314036
Target:  5'- cGGGCCGGUCaGCaugGUgCCGgacuggcccgacuucGCCGCGc -3'
miRNA:   3'- aCCCGGCCGG-CGga-CAaGGU---------------UGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 21745 0.69 0.192085
Target:  5'- uUGGGCgCGGCCGCg---UCCAcauaggacagGCCGCc -3'
miRNA:   3'- -ACCCG-GCCGGCGgacaAGGU----------UGGCGu -5'
26798 5' -62.1 NC_005808.1 + 19745 0.71 0.135534
Target:  5'- uUGGGCUGGuuGCCguUGUUgCCGGCCa-- -3'
miRNA:   3'- -ACCCGGCCggCGG--ACAA-GGUUGGcgu -5'
26798 5' -62.1 NC_005808.1 + 19495 0.67 0.261657
Target:  5'- gUGGGCaGGCCGCUg---CgAACCGUg -3'
miRNA:   3'- -ACCCGgCCGGCGGacaaGgUUGGCGu -5'
26798 5' -62.1 NC_005808.1 + 18191 0.71 0.131885
Target:  5'- cGGGCCGGCUGCgCUucUUCAACuugCGCAg -3'
miRNA:   3'- aCCCGGCCGGCG-GAcaAGGUUG---GCGU- -5'
26798 5' -62.1 NC_005808.1 + 17304 0.68 0.213268
Target:  5'- aGGGCCGGCCGCa-----CGACCuCAa -3'
miRNA:   3'- aCCCGGCCGGCGgacaagGUUGGcGU- -5'
26798 5' -62.1 NC_005808.1 + 16985 0.68 0.224594
Target:  5'- cUGGcGaCCGcGCCGCCgugGUUgCCAcugccuggGCCGCAg -3'
miRNA:   3'- -ACC-C-GGC-CGGCGGa--CAA-GGU--------UGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.