Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26798 | 5' | -62.1 | NC_005808.1 | + | 36213 | 0.78 | 0.041569 |
Target: 5'- cGGGCCGGCCgGCCUGcgCCugauuGCCGaCGu -3' miRNA: 3'- aCCCGGCCGG-CGGACaaGGu----UGGC-GU- -5' |
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26798 | 5' | -62.1 | NC_005808.1 | + | 16985 | 0.68 | 0.224594 |
Target: 5'- cUGGcGaCCGcGCCGCCgugGUUgCCAcugccuggGCCGCAg -3' miRNA: 3'- -ACC-C-GGC-CGGCGGa--CAA-GGU--------UGGCGU- -5' |
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26798 | 5' | -62.1 | NC_005808.1 | + | 17304 | 0.68 | 0.213268 |
Target: 5'- aGGGCCGGCCGCa-----CGACCuCAa -3' miRNA: 3'- aCCCGGCCGGCGgacaagGUUGGcGU- -5' |
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26798 | 5' | -62.1 | NC_005808.1 | + | 12471 | 0.68 | 0.202436 |
Target: 5'- -aGGCCGGCgGCgUGUUCUGG-CGCGg -3' miRNA: 3'- acCCGGCCGgCGgACAAGGUUgGCGU- -5' |
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26798 | 5' | -62.1 | NC_005808.1 | + | 18191 | 0.71 | 0.131885 |
Target: 5'- cGGGCCGGCUGCgCUucUUCAACuugCGCAg -3' miRNA: 3'- aCCCGGCCGGCG-GAcaAGGUUG---GCGU- -5' |
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26798 | 5' | -62.1 | NC_005808.1 | + | 7025 | 0.71 | 0.121475 |
Target: 5'- aUGGGCguuUGuGCCGCCUGUUgCAGCaggCGCAu -3' miRNA: 3'- -ACCCG---GC-CGGCGGACAAgGUUG---GCGU- -5' |
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26798 | 5' | -62.1 | NC_005808.1 | + | 36244 | 0.66 | 0.296223 |
Target: 5'- gUGGGCCGGuUCGCCac--CCAGaCGCAc -3' miRNA: 3'- -ACCCGGCC-GGCGGacaaGGUUgGCGU- -5' |
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26798 | 5' | -62.1 | NC_005808.1 | + | 4173 | 0.68 | 0.224016 |
Target: 5'- cUGGuaGCCGGCCGCCucgauggcgggcaUGUU--GGCCGCGa -3' miRNA: 3'- -ACC--CGGCCGGCGG-------------ACAAggUUGGCGU- -5' |
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26798 | 5' | -62.1 | NC_005808.1 | + | 23744 | 0.7 | 0.168219 |
Target: 5'- gUGGGCaugGGCCGCCcgGccUUCUAcauGCCGCGc -3' miRNA: 3'- -ACCCGg--CCGGCGGa-C--AAGGU---UGGCGU- -5' |
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26798 | 5' | -62.1 | NC_005808.1 | + | 15165 | 0.72 | 0.102911 |
Target: 5'- aGGGCCugcGGCCGCCgggcgcgGUgcgCCAGgCGCGc -3' miRNA: 3'- aCCCGG---CCGGCGGa------CAa--GGUUgGCGU- -5' |
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26798 | 5' | -62.1 | NC_005808.1 | + | 891 | 0.75 | 0.067346 |
Target: 5'- aGGGCC-GCCGCgUUGUUCCAgaaguugACCGCGc -3' miRNA: 3'- aCCCGGcCGGCG-GACAAGGU-------UGGCGU- -5' |
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26798 | 5' | -62.1 | NC_005808.1 | + | 5264 | 0.66 | 0.311011 |
Target: 5'- gGGGUCGGCaauGCgUcGUUCCAgcgucgauuGCUGCAu -3' miRNA: 3'- aCCCGGCCGg--CGgA-CAAGGU---------UGGCGU- -5' |
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26798 | 5' | -62.1 | NC_005808.1 | + | 30772 | 0.73 | 0.094662 |
Target: 5'- cGcGGCgCGGCCgGUCUGUUCCAGuCCGUc -3' miRNA: 3'- aC-CCG-GCCGG-CGGACAAGGUU-GGCGu -5' |
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26798 | 5' | -62.1 | NC_005808.1 | + | 1762 | 0.68 | 0.213268 |
Target: 5'- -uGGCCGGCCugcGCCUGgcgcgUCgGGCCGa- -3' miRNA: 3'- acCCGGCCGG---CGGACa----AGgUUGGCgu -5' |
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26798 | 5' | -62.1 | NC_005808.1 | + | 7168 | 0.66 | 0.318614 |
Target: 5'- aGGGCCGGgCGCUUGUcggaUUCGGggGCGa -3' miRNA: 3'- aCCCGGCCgGCGGACA----AGGUUggCGU- -5' |
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26798 | 5' | -62.1 | NC_005808.1 | + | 31694 | 0.66 | 0.289036 |
Target: 5'- cGGGCaGGUCGCCa-UUCCGguggaggaauacGCCGCGc -3' miRNA: 3'- aCCCGgCCGGCGGacAAGGU------------UGGCGU- -5' |
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26798 | 5' | -62.1 | NC_005808.1 | + | 14136 | 0.66 | 0.281987 |
Target: 5'- -cGGCCaGCgGCUUGccUUCCGGCCGUu -3' miRNA: 3'- acCCGGcCGgCGGAC--AAGGUUGGCGu -5' |
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26798 | 5' | -62.1 | NC_005808.1 | + | 19495 | 0.67 | 0.261657 |
Target: 5'- gUGGGCaGGCCGCUg---CgAACCGUg -3' miRNA: 3'- -ACCCGgCCGGCGGacaaGgUUGGCGu -5' |
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26798 | 5' | -62.1 | NC_005808.1 | + | 16937 | 0.67 | 0.261001 |
Target: 5'- aGGGCaCGG-CGCCg--UCCAgcagcguGCCGCGu -3' miRNA: 3'- aCCCG-GCCgGCGGacaAGGU-------UGGCGU- -5' |
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26798 | 5' | -62.1 | NC_005808.1 | + | 4258 | 0.67 | 0.255151 |
Target: 5'- cGGuGCCGGCCGUCaGcgCCGgcauggugaugGCCGUg -3' miRNA: 3'- aCC-CGGCCGGCGGaCaaGGU-----------UGGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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