miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
268 5' -52.6 AC_000008.1 + 26515 1.13 0.000459
Target:  5'- aAGAGCAACAACAGCGCCAAGGCUACCg -3'
miRNA:   3'- -UCUCGUUGUUGUCGCGGUUCCGAUGG- -5'
268 5' -52.6 AC_000008.1 + 2151 0.79 0.123814
Target:  5'- aGGAGCAGCAGCAGCaGCagGAGGaaGCCa -3'
miRNA:   3'- -UCUCGUUGUUGUCG-CGg-UUCCgaUGG- -5'
268 5' -52.6 AC_000008.1 + 26714 0.79 0.131388
Target:  5'- cGGcAGCAACAGCAGCgGCCAcacagaagcaaAGGCgACCg -3'
miRNA:   3'- -UC-UCGUUGUUGUCG-CGGU-----------UCCGaUGG- -5'
268 5' -52.6 AC_000008.1 + 11085 0.74 0.268007
Target:  5'- aAGAGCAAgAGCAGCGgCAgacaugcaGGGC-ACCc -3'
miRNA:   3'- -UCUCGUUgUUGUCGCgGU--------UCCGaUGG- -5'
268 5' -52.6 AC_000008.1 + 33195 0.73 0.331279
Target:  5'- uAGGGCGguggugcuGCAGCAGCGCgCGAauaaacuGCUGCCg -3'
miRNA:   3'- -UCUCGU--------UGUUGUCGCG-GUUc------CGAUGG- -5'
268 5' -52.6 AC_000008.1 + 4534 0.72 0.348721
Target:  5'- uAGAGguGCGGCGGCaGCCAcaguuaGGGCUuCUg -3'
miRNA:   3'- -UCUCguUGUUGUCG-CGGU------UCCGAuGG- -5'
268 5' -52.6 AC_000008.1 + 9427 0.72 0.385533
Target:  5'- -cGGCGACGACGGCGCaccggGAGGCggucgACa -3'
miRNA:   3'- ucUCGUUGUUGUCGCGg----UUCCGa----UGg -5'
268 5' -52.6 AC_000008.1 + 13587 0.71 0.404877
Target:  5'- uAGAGUuGCAACAGCGCgagcaggcaGAGGCggcGCUg -3'
miRNA:   3'- -UCUCGuUGUUGUCGCGg--------UUCCGa--UGG- -5'
268 5' -52.6 AC_000008.1 + 9465 0.71 0.404877
Target:  5'- cGGGCAGugcCGGCGGCGCCugaggagcgGAGGUUguaGCCa -3'
miRNA:   3'- uCUCGUU---GUUGUCGCGG---------UUCCGA---UGG- -5'
268 5' -52.6 AC_000008.1 + 12679 0.71 0.414776
Target:  5'- uGGcGCAGCGugAGCGCgcgcagcagCAGGGCaACCu -3'
miRNA:   3'- -UCuCGUUGUugUCGCG---------GUUCCGaUGG- -5'
268 5' -52.6 AC_000008.1 + 32094 0.71 0.424822
Target:  5'- -cAGCGGCugaAGCGGCgGCgGAGGCUGCa -3'
miRNA:   3'- ucUCGUUG---UUGUCG-CGgUUCCGAUGg -5'
268 5' -52.6 AC_000008.1 + 30488 0.7 0.455808
Target:  5'- cAGGGCAgcggccgaGCAACAGCGCaugaauCAAGaGCU-CCa -3'
miRNA:   3'- -UCUCGU--------UGUUGUCGCG------GUUC-CGAuGG- -5'
268 5' -52.6 AC_000008.1 + 24218 0.7 0.477128
Target:  5'- -aAGgAACAGCuGCGCCAugagcGGCUugCu -3'
miRNA:   3'- ucUCgUUGUUGuCGCGGUu----CCGAugG- -5'
268 5' -52.6 AC_000008.1 + 24136 0.69 0.509996
Target:  5'- cGAGCAGcCAGCGGC-CCucGGGCUcuACUa -3'
miRNA:   3'- uCUCGUU-GUUGUCGcGGu-UCCGA--UGG- -5'
268 5' -52.6 AC_000008.1 + 14187 0.69 0.521163
Target:  5'- gAGAGUGugGugagcGCGGCGCCAGuGGCgGCg -3'
miRNA:   3'- -UCUCGUugU-----UGUCGCGGUU-CCGaUGg -5'
268 5' -52.6 AC_000008.1 + 16710 0.69 0.521163
Target:  5'- cAGGGCGuuguaGGCAGUGCCAgaguaGGGCUuaaaaguaggGCCc -3'
miRNA:   3'- -UCUCGUug---UUGUCGCGGU-----UCCGA----------UGG- -5'
268 5' -52.6 AC_000008.1 + 8463 0.69 0.521163
Target:  5'- aGGGGCugguugguGGCGGCGUCGAuGGCUugCa -3'
miRNA:   3'- -UCUCGuug-----UUGUCGCGGUU-CCGAugG- -5'
268 5' -52.6 AC_000008.1 + 9296 0.69 0.529037
Target:  5'- uGAGCucgGCGACAgugucgcgcaccucGCGCUcaAAGGCUACa -3'
miRNA:   3'- uCUCGu--UGUUGU--------------CGCGG--UUCCGAUGg -5'
268 5' -52.6 AC_000008.1 + 30398 0.69 0.543773
Target:  5'- aAGGGCaAGCuGC-GCGCCAAGG--GCCa -3'
miRNA:   3'- -UCUCG-UUGuUGuCGCGGUUCCgaUGG- -5'
268 5' -52.6 AC_000008.1 + 15064 0.69 0.555199
Target:  5'- cGGcAGCAACAGCAGUGgCAGcGGCg--- -3'
miRNA:   3'- -UC-UCGUUGUUGUCGCgGUU-CCGaugg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.