miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
268 5' -52.6 AC_000008.1 + 856 0.66 0.728952
Target:  5'- cGAGCAGCcggAGCAGagaGCCuuGGGUccgguuucuaUGCCa -3'
miRNA:   3'- uCUCGUUG---UUGUCg--CGGu-UCCG----------AUGG- -5'
268 5' -52.6 AC_000008.1 + 2151 0.79 0.123814
Target:  5'- aGGAGCAGCAGCAGCaGCagGAGGaaGCCa -3'
miRNA:   3'- -UCUCGUUGUUGUCG-CGg-UUCCgaUGG- -5'
268 5' -52.6 AC_000008.1 + 2656 0.66 0.690143
Target:  5'- cGGAGCGGCGGCGGCaGCaguuuauucgcGcGCUGCUg -3'
miRNA:   3'- -UCUCGUUGUUGUCG-CGguu--------C-CGAUGG- -5'
268 5' -52.6 AC_000008.1 + 4534 0.72 0.348721
Target:  5'- uAGAGguGCGGCGGCaGCCAcaguuaGGGCUuCUg -3'
miRNA:   3'- -UCUCguUGUUGUCG-CGGU------UCCGAuGG- -5'
268 5' -52.6 AC_000008.1 + 6433 0.67 0.624868
Target:  5'- cAGGGUGACAAgguCAaCGCUGGuGGCUACCu -3'
miRNA:   3'- -UCUCGUUGUU---GUcGCGGUU-CCGAUGG- -5'
268 5' -52.6 AC_000008.1 + 6696 0.69 0.555199
Target:  5'- uGGGguGgGugAGCGCgGAGGCguacaUGCCg -3'
miRNA:   3'- uCUCguUgUugUCGCGgUUCCG-----AUGG- -5'
268 5' -52.6 AC_000008.1 + 6832 0.66 0.706242
Target:  5'- gGGAGCGAgGAgguCGG-GaCCGAGGUUGCUa -3'
miRNA:   3'- -UCUCGUUgUU---GUCgC-GGUUCCGAUGG- -5'
268 5' -52.6 AC_000008.1 + 8463 0.69 0.521163
Target:  5'- aGGGGCugguugguGGCGGCGUCGAuGGCUugCa -3'
miRNA:   3'- -UCUCGuug-----UUGUCGCGGUU-CCGAugG- -5'
268 5' -52.6 AC_000008.1 + 8669 0.67 0.659945
Target:  5'- aGGAGCugguGCuGC-GCGCguAGGUUGCUg -3'
miRNA:   3'- -UCUCGu---UGuUGuCGCGguUCCGAUGG- -5'
268 5' -52.6 AC_000008.1 + 9296 0.69 0.529037
Target:  5'- uGAGCucgGCGACAgugucgcgcaccucGCGCUcaAAGGCUACa -3'
miRNA:   3'- uCUCGu--UGUUGU--------------CGCGG--UUCCGAUGg -5'
268 5' -52.6 AC_000008.1 + 9427 0.72 0.385533
Target:  5'- -cGGCGACGACGGCGCaccggGAGGCggucgACa -3'
miRNA:   3'- ucUCGUUGUUGUCGCGg----UUCCGa----UGg -5'
268 5' -52.6 AC_000008.1 + 9465 0.71 0.404877
Target:  5'- cGGGCAGugcCGGCGGCGCCugaggagcgGAGGUUguaGCCa -3'
miRNA:   3'- uCUCGUU---GUUGUCGCGG---------UUCCGA---UGG- -5'
268 5' -52.6 AC_000008.1 + 9479 0.67 0.668104
Target:  5'- --cGCGGCGACGGCGCauggucucggugacGGCgcgGCCg -3'
miRNA:   3'- ucuCGUUGUUGUCGCGguu-----------CCGa--UGG- -5'
268 5' -52.6 AC_000008.1 + 9743 0.67 0.636569
Target:  5'- cGGGCGGCAgcggGCGGCGgUCGGGGUUGu- -3'
miRNA:   3'- uCUCGUUGU----UGUCGC-GGUUCCGAUgg -5'
268 5' -52.6 AC_000008.1 + 10341 0.67 0.647096
Target:  5'- aAGuGCGGCGGCGGCuggcgguagagggGCCAgcguaGGGUgGCCg -3'
miRNA:   3'- -UCuCGUUGUUGUCG-------------CGGU-----UCCGaUGG- -5'
268 5' -52.6 AC_000008.1 + 11085 0.74 0.268007
Target:  5'- aAGAGCAAgAGCAGCGgCAgacaugcaGGGC-ACCc -3'
miRNA:   3'- -UCUCGUUgUUGUCGCgGU--------UCCGaUGG- -5'
268 5' -52.6 AC_000008.1 + 12441 0.66 0.706242
Target:  5'- cGGcAGCAGCcGCAG-GCCAAccGGCUcuCCg -3'
miRNA:   3'- -UC-UCGUUGuUGUCgCGGUU--CCGAu-GG- -5'
268 5' -52.6 AC_000008.1 + 12679 0.71 0.414776
Target:  5'- uGGcGCAGCGugAGCGCgcgcagcagCAGGGCaACCu -3'
miRNA:   3'- -UCuCGUUGUugUCGCG---------GUUCCGaUGG- -5'
268 5' -52.6 AC_000008.1 + 13587 0.71 0.404877
Target:  5'- uAGAGUuGCAACAGCGCgagcaggcaGAGGCggcGCUg -3'
miRNA:   3'- -UCUCGuUGUUGUCGCGg--------UUCCGa--UGG- -5'
268 5' -52.6 AC_000008.1 + 14187 0.69 0.521163
Target:  5'- gAGAGUGugGugagcGCGGCGCCAGuGGCgGCg -3'
miRNA:   3'- -UCUCGUugU-----UGUCGCGGUU-CCGaUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.