Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
268 | 5' | -52.6 | AC_000008.1 | + | 6433 | 0.67 | 0.624868 |
Target: 5'- cAGGGUGACAAgguCAaCGCUGGuGGCUACCu -3' miRNA: 3'- -UCUCGUUGUU---GUcGCGGUU-CCGAUGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 6696 | 0.69 | 0.555199 |
Target: 5'- uGGGguGgGugAGCGCgGAGGCguacaUGCCg -3' miRNA: 3'- uCUCguUgUugUCGCGgUUCCG-----AUGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 15064 | 0.69 | 0.555199 |
Target: 5'- cGGcAGCAACAGCAGUGgCAGcGGCg--- -3' miRNA: 3'- -UC-UCGUUGUUGUCGCgGUU-CCGaugg -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 21679 | 0.69 | 0.555199 |
Target: 5'- aAGaAGCAagcaacaucaACAACAGCuGCCGccauGGGCU-CCa -3' miRNA: 3'- -UC-UCGU----------UGUUGUCG-CGGU----UCCGAuGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 15506 | 0.69 | 0.555199 |
Target: 5'- cAGAuCAGCAACuuuccgguggugGGCGCCGAGcuGUUGCCc -3' miRNA: 3'- -UCUcGUUGUUG------------UCGCGGUUC--CGAUGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 15186 | 0.68 | 0.577091 |
Target: 5'- aGGAGaAGCGcgcugaggccgaaGCAGCgGCCGAaGCUGCCg -3' miRNA: 3'- -UCUCgUUGU-------------UGUCG-CGGUUcCGAUGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 16848 | 0.68 | 0.601499 |
Target: 5'- uGAGCAGgcCAACgAGCGCCucGGGGaguuUGCCu -3' miRNA: 3'- uCUCGUU--GUUG-UCGCGG--UUCCg---AUGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 16261 | 0.68 | 0.613174 |
Target: 5'- cGGGCGGCcauGCGG-GCCGcucgaAGGCUgGCCg -3' miRNA: 3'- uCUCGUUGu--UGUCgCGGU-----UCCGA-UGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 16502 | 0.68 | 0.613174 |
Target: 5'- -cAGCGGCGGCGGCGCgCAAcgaaGCUAUg -3' miRNA: 3'- ucUCGUUGUUGUCGCG-GUUc---CGAUGg -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 9296 | 0.69 | 0.529037 |
Target: 5'- uGAGCucgGCGACAgugucgcgcaccucGCGCUcaAAGGCUACa -3' miRNA: 3'- uCUCGu--UGUUGU--------------CGCGG--UUCCGAUGg -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 8463 | 0.69 | 0.521163 |
Target: 5'- aGGGGCugguugguGGCGGCGUCGAuGGCUugCa -3' miRNA: 3'- -UCUCGuug-----UUGUCGCGGUU-CCGAugG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 14187 | 0.69 | 0.521163 |
Target: 5'- gAGAGUGugGugagcGCGGCGCCAGuGGCgGCg -3' miRNA: 3'- -UCUCGUugU-----UGUCGCGGUU-CCGaUGg -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 2151 | 0.79 | 0.123814 |
Target: 5'- aGGAGCAGCAGCAGCaGCagGAGGaaGCCa -3' miRNA: 3'- -UCUCGUUGUUGUCG-CGg-UUCCgaUGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 26714 | 0.79 | 0.131388 |
Target: 5'- cGGcAGCAACAGCAGCgGCCAcacagaagcaaAGGCgACCg -3' miRNA: 3'- -UC-UCGUUGUUGUCG-CGGU-----------UCCGaUGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 11085 | 0.74 | 0.268007 |
Target: 5'- aAGAGCAAgAGCAGCGgCAgacaugcaGGGC-ACCc -3' miRNA: 3'- -UCUCGUUgUUGUCGCgGU--------UCCGaUGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 33195 | 0.73 | 0.331279 |
Target: 5'- uAGGGCGguggugcuGCAGCAGCGCgCGAauaaacuGCUGCCg -3' miRNA: 3'- -UCUCGU--------UGUUGUCGCG-GUUc------CGAUGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 9427 | 0.72 | 0.385533 |
Target: 5'- -cGGCGACGACGGCGCaccggGAGGCggucgACa -3' miRNA: 3'- ucUCGUUGUUGUCGCGg----UUCCGa----UGg -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 13587 | 0.71 | 0.404877 |
Target: 5'- uAGAGUuGCAACAGCGCgagcaggcaGAGGCggcGCUg -3' miRNA: 3'- -UCUCGuUGUUGUCGCGg--------UUCCGa--UGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 12679 | 0.71 | 0.414776 |
Target: 5'- uGGcGCAGCGugAGCGCgcgcagcagCAGGGCaACCu -3' miRNA: 3'- -UCuCGUUGUugUCGCG---------GUUCCGaUGG- -5' |
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268 | 5' | -52.6 | AC_000008.1 | + | 30488 | 0.7 | 0.455808 |
Target: 5'- cAGGGCAgcggccgaGCAACAGCGCaugaauCAAGaGCU-CCa -3' miRNA: 3'- -UCUCGU--------UGUUGUCGCG------GUUC-CGAuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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