Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26801 | 5' | -62.8 | NC_005808.1 | + | 10110 | 0.66 | 0.293153 |
Target: 5'- uCGGC-CUUGGauucggGCGCAUCgGCC-GCc -3' miRNA: 3'- -GCCGcGGACCga----CGCGUAGgCGGaCG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 27743 | 0.68 | 0.211316 |
Target: 5'- aGGCGCCcagcGuGCgGCGCuggCCGCCaacgGCa -3' miRNA: 3'- gCCGCGGa---C-CGaCGCGua-GGCGGa---CG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 16454 | 0.66 | 0.27229 |
Target: 5'- aCGGCGagccGCUGCGCcaaAUCUGCC-GCg -3' miRNA: 3'- -GCCGCggacCGACGCG---UAGGCGGaCG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 13379 | 0.73 | 0.081914 |
Target: 5'- uCGGCGgaCUGGaCgccaugcGCGCGUCCGaCCUGCc -3' miRNA: 3'- -GCCGCg-GACC-Ga------CGCGUAGGC-GGACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 18864 | 0.66 | 0.286062 |
Target: 5'- uGGCGCU--GCUGCGCG-CCaCCgagGCa -3' miRNA: 3'- gCCGCGGacCGACGCGUaGGcGGa--CG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 5337 | 0.78 | 0.035891 |
Target: 5'- uGGCGCagcaUGGCaucgcgcUGCGUggCCGCCUGCa -3' miRNA: 3'- gCCGCGg---ACCG-------ACGCGuaGGCGGACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 42423 | 0.82 | 0.017016 |
Target: 5'- aCGGUGCCcaGCgacaccgggGCGCAUCCGCCUGCg -3' miRNA: 3'- -GCCGCGGacCGa--------CGCGUAGGCGGACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 18455 | 0.67 | 0.216841 |
Target: 5'- aGGCGCUgGGCcagGCGCGcagCCGgCUGg -3' miRNA: 3'- gCCGCGGaCCGa--CGCGUa--GGCgGACg -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 37489 | 0.71 | 0.130966 |
Target: 5'- aCGGCGCCaGccgcaccggacGCUGgGCcggCCGCCUGUu -3' miRNA: 3'- -GCCGCGGaC-----------CGACgCGua-GGCGGACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 654 | 0.67 | 0.252636 |
Target: 5'- uCGGUGCCcaaGGCUGUaGCcaccaggCCGCCUacgGCg -3' miRNA: 3'- -GCCGCGGa--CCGACG-CGua-----GGCGGA---CG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 38097 | 0.67 | 0.240192 |
Target: 5'- -aGCGCCugUGGCgccgcGCGCAUCCGgCgGUu -3' miRNA: 3'- gcCGCGG--ACCGa----CGCGUAGGCgGaCG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 33915 | 0.69 | 0.180656 |
Target: 5'- gCGGCGCacaccugGGC-GCGCAgcagCCG-CUGCa -3' miRNA: 3'- -GCCGCGga-----CCGaCGCGUa---GGCgGACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 8157 | 0.69 | 0.171346 |
Target: 5'- uCGGCGCUgcguccCUGCGCGUgCGCCcggaUGCu -3' miRNA: 3'- -GCCGCGGacc---GACGCGUAgGCGG----ACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 8385 | 0.69 | 0.166854 |
Target: 5'- cCGGCcucGCgCUGGCUGCGUagccaGUCgGCCaggGCc -3' miRNA: 3'- -GCCG---CG-GACCGACGCG-----UAGgCGGa--CG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 24161 | 0.69 | 0.158184 |
Target: 5'- -aGCGCCUcgacGGCUGCGCGcuUCgGCgUGUc -3' miRNA: 3'- gcCGCGGA----CCGACGCGU--AGgCGgACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 27842 | 0.67 | 0.22249 |
Target: 5'- uGGCGCC-GGCcGCGCcgCUGCUc-- -3' miRNA: 3'- gCCGCGGaCCGaCGCGuaGGCGGacg -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 20748 | 0.67 | 0.228265 |
Target: 5'- uGGCGCCguagagGcGCUGCGCcgcgcucgacucAUCgCGCggCUGCa -3' miRNA: 3'- gCCGCGGa-----C-CGACGCG------------UAG-GCG--GACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 2341 | 0.67 | 0.228265 |
Target: 5'- -aGUGCgUGGC-GCGCGUgCGCC-GCa -3' miRNA: 3'- gcCGCGgACCGaCGCGUAgGCGGaCG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 8601 | 0.67 | 0.234165 |
Target: 5'- nGGUGCuggauaagCUGGUUGCGCuucUCgGCCgcUGCg -3' miRNA: 3'- gCCGCG--------GACCGACGCGu--AGgCGG--ACG- -5' |
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26801 | 5' | -62.8 | NC_005808.1 | + | 20617 | 0.67 | 0.234165 |
Target: 5'- gCGGCGUCgcaGGUcG-GUGUCgGCCUGCg -3' miRNA: 3'- -GCCGCGGa--CCGaCgCGUAGgCGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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