miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26804 3' -55.5 NC_005808.1 + 42353 0.66 0.574472
Target:  5'- --cGGCACCAC-CgGGGAaacccAGCGcGCCAa -3'
miRNA:   3'- ucaCCGUGGUGuGgUUCU-----UCGU-CGGU- -5'
26804 3' -55.5 NC_005808.1 + 41992 0.66 0.563225
Target:  5'- --cGGCGCUGCugGCCGAcccgcAGGCGGCCAu -3'
miRNA:   3'- ucaCCGUGGUG--UGGUUc----UUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 41616 0.67 0.486612
Target:  5'- --cGGCACCG-GCCA---GGCGGCCAa -3'
miRNA:   3'- ucaCCGUGGUgUGGUucuUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 41004 0.66 0.563225
Target:  5'- ---cGCACUcgacCACCAGGAaggcGGCGGCCAc -3'
miRNA:   3'- ucacCGUGGu---GUGGUUCU----UCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 40160 0.67 0.529877
Target:  5'- cGUGGCGCCGauCUucGAGGcCGGCCu -3'
miRNA:   3'- uCACCGUGGUguGGuuCUUC-GUCGGu -5'
26804 3' -55.5 NC_005808.1 + 39553 0.66 0.563225
Target:  5'- cGU-GCugCugACCAGGAuggAGCAGCa- -3'
miRNA:   3'- uCAcCGugGugUGGUUCU---UCGUCGgu -5'
26804 3' -55.5 NC_005808.1 + 39112 1.08 0.000585
Target:  5'- aAGUGGCACCACACCAAGAAGCAGCCAu -3'
miRNA:   3'- -UCACCGUGGUGUGGUUCUUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 38455 0.66 0.552038
Target:  5'- aGGUGGgcggcuucCACUauGCGCCGGGAAGCAacGCUg -3'
miRNA:   3'- -UCACC--------GUGG--UGUGGUUCUUCGU--CGGu -5'
26804 3' -55.5 NC_005808.1 + 38412 0.67 0.486612
Target:  5'- --cGGCcaacauGCC-CGCCAucGAGGCGGCCGg -3'
miRNA:   3'- ucaCCG------UGGuGUGGUu-CUUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 38103 0.69 0.415291
Target:  5'- uGUGGCGCCGCGCgCAuccGGCGGUUu -3'
miRNA:   3'- uCACCGUGGUGUG-GUucuUCGUCGGu -5'
26804 3' -55.5 NC_005808.1 + 37863 0.66 0.552038
Target:  5'- nGUGGCcgagaacaucGCgGuCAUCAucGAAGCAGCCAa -3'
miRNA:   3'- uCACCG----------UGgU-GUGGUu-CUUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 37827 0.67 0.497279
Target:  5'- --gGGCGCagugugggcgaACGCCGAGAAcaucGCGGCCGu -3'
miRNA:   3'- ucaCCGUGg----------UGUGGUUCUU----CGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 37667 0.68 0.465612
Target:  5'- cGUGGCGCC-CGagggCAAGAAGCuGGUCGu -3'
miRNA:   3'- uCACCGUGGuGUg---GUUCUUCG-UCGGU- -5'
26804 3' -55.5 NC_005808.1 + 36442 0.66 0.597108
Target:  5'- gGGUGcccGUGCCuCACCccugGGGAAGUAGCCu -3'
miRNA:   3'- -UCAC---CGUGGuGUGG----UUCUUCGUCGGu -5'
26804 3' -55.5 NC_005808.1 + 36144 0.67 0.54092
Target:  5'- cGUGGUGCgugaguuCgGGGAAGCAGCCAa -3'
miRNA:   3'- uCACCGUGgugu---GgUUCUUCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 35049 0.71 0.293664
Target:  5'- cGGUGGCGCCGCAgaUCGAGcacGCcGCCGa -3'
miRNA:   3'- -UCACCGUGGUGU--GGUUCuu-CGuCGGU- -5'
26804 3' -55.5 NC_005808.1 + 34678 0.67 0.54092
Target:  5'- aGGUGGaCGCCGaGCgCAAcGAGCAGCUg -3'
miRNA:   3'- -UCACC-GUGGUgUG-GUUcUUCGUCGGu -5'
26804 3' -55.5 NC_005808.1 + 33916 0.67 0.50805
Target:  5'- --cGGCG-CACACCuGGGcgcgcAGCAGCCGc -3'
miRNA:   3'- ucaCCGUgGUGUGGuUCU-----UCGUCGGU- -5'
26804 3' -55.5 NC_005808.1 + 33396 0.71 0.301356
Target:  5'- cGU-GCGCCGCGCCGccGAGCAGgCCAa -3'
miRNA:   3'- uCAcCGUGGUGUGGUucUUCGUC-GGU- -5'
26804 3' -55.5 NC_005808.1 + 33291 0.67 0.50805
Target:  5'- cGUGcGcCGCCAgguCGCCGAGGAagucaaugcGCAGCCGg -3'
miRNA:   3'- uCAC-C-GUGGU---GUGGUUCUU---------CGUCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.