miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26807 3' -55 NC_005808.1 + 40222 1.13 0.000489
Target:  5'- gCCAUGCCGUGCGCCUCGAACCGUUGCc -3'
miRNA:   3'- -GGUACGGCACGCGGAGCUUGGCAACG- -5'
26807 3' -55 NC_005808.1 + 23756 0.84 0.054894
Target:  5'- gCCAUGCCG-GCGCCacCGGGCCGaUGCg -3'
miRNA:   3'- -GGUACGGCaCGCGGa-GCUUGGCaACG- -5'
26807 3' -55 NC_005808.1 + 10671 0.74 0.257611
Target:  5'- gCGUGUCGagcaGCGCCUCGAaacGCCGcagGCa -3'
miRNA:   3'- gGUACGGCa---CGCGGAGCU---UGGCaa-CG- -5'
26807 3' -55 NC_005808.1 + 3784 0.73 0.300328
Target:  5'- gUCGUGCCGaaagccaGCGCCUgGAAUuCGUUGUa -3'
miRNA:   3'- -GGUACGGCa------CGCGGAgCUUG-GCAACG- -5'
26807 3' -55 NC_005808.1 + 12297 0.72 0.348316
Target:  5'- gCGUGCCGgcuacgGCgGCgUCGAAUuCGUUGCu -3'
miRNA:   3'- gGUACGGCa-----CG-CGgAGCUUG-GCAACG- -5'
26807 3' -55 NC_005808.1 + 14719 0.7 0.420384
Target:  5'- uCCAUGCCcUGCGCC-CGGuaGCCccagGCa -3'
miRNA:   3'- -GGUACGGcACGCGGaGCU--UGGcaa-CG- -5'
26807 3' -55 NC_005808.1 + 9057 0.7 0.439761
Target:  5'- gCCGUGCCGgauuCGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCac--GCGGa-GCU--UGGCAa--CG- -5'
26807 3' -55 NC_005808.1 + 9009 0.7 0.439761
Target:  5'- gCCGUGCCGgauuCGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCac--GCGGa-GCU--UGGCAa--CG- -5'
26807 3' -55 NC_005808.1 + 15851 0.7 0.439761
Target:  5'- uCCGUGUCGUGCugguGCCacgcgcCGAuCUGUUGCu -3'
miRNA:   3'- -GGUACGGCACG----CGGa-----GCUuGGCAACG- -5'
26807 3' -55 NC_005808.1 + 8415 0.69 0.489279
Target:  5'- gCCAggGCCGUGCgcuugucuacgGCCUUGAggcuuugGCCcUUGCg -3'
miRNA:   3'- -GGUa-CGGCACG-----------CGGAGCU-------UGGcAACG- -5'
26807 3' -55 NC_005808.1 + 19484 0.69 0.499706
Target:  5'- gCCAggUGCCGguggGCagGCCgcugCGAACCGUggucuugUGCu -3'
miRNA:   3'- -GGU--ACGGCa---CG--CGGa---GCUUGGCA-------ACG- -5'
26807 3' -55 NC_005808.1 + 10928 0.69 0.500755
Target:  5'- ---cGCCGguuugcaGgGCCUCGGGCaGUUGCg -3'
miRNA:   3'- gguaCGGCa------CgCGGAGCUUGgCAACG- -5'
26807 3' -55 NC_005808.1 + 4311 0.69 0.508119
Target:  5'- aCCAgcuUGCCGUugaccuccacgaugGUgccaGCCUUGAugcugGCCGUUGCg -3'
miRNA:   3'- -GGU---ACGGCA--------------CG----CGGAGCU-----UGGCAACG- -5'
26807 3' -55 NC_005808.1 + 8944 0.69 0.51129
Target:  5'- gCCGUGCCGgauuCGCCagCGGugGCCGU-GCc -3'
miRNA:   3'- -GGUACGGCac--GCGGa-GCU--UGGCAaCG- -5'
26807 3' -55 NC_005808.1 + 20739 0.68 0.532625
Target:  5'- aCAUGCUGcugGCGCCguaGAGgCGcUGCg -3'
miRNA:   3'- gGUACGGCa--CGCGGag-CUUgGCaACG- -5'
26807 3' -55 NC_005808.1 + 38337 0.68 0.554272
Target:  5'- aCCAUGCCG-GCGCUgacGGCCG--GCa -3'
miRNA:   3'- -GGUACGGCaCGCGGagcUUGGCaaCG- -5'
26807 3' -55 NC_005808.1 + 31516 0.68 0.565194
Target:  5'- gCGUGCUGcUGgGCCUCGcugUGUUGCc -3'
miRNA:   3'- gGUACGGC-ACgCGGAGCuugGCAACG- -5'
26807 3' -55 NC_005808.1 + 13383 0.68 0.576171
Target:  5'- gCCAUGCCcaGCGCgCgguuguaggCGGcAUCGUUGCg -3'
miRNA:   3'- -GGUACGGcaCGCG-Ga--------GCU-UGGCAACG- -5'
26807 3' -55 NC_005808.1 + 8024 0.68 0.587195
Target:  5'- gCCAgcuucGCCgGUGacaGCCUCGAcgcucaACCGcUGCu -3'
miRNA:   3'- -GGUa----CGG-CACg--CGGAGCU------UGGCaACG- -5'
26807 3' -55 NC_005808.1 + 35042 0.68 0.587195
Target:  5'- uCCAaGCCGgugGCGCCgcagaUCGAGCaCGccGCc -3'
miRNA:   3'- -GGUaCGGCa--CGCGG-----AGCUUG-GCaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.