miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26807 3' -55 NC_005808.1 + 4262 0.67 0.620462
Target:  5'- gCcgGCCGUcaGCGCCggcauggUGAugGCCGUgucgGCg -3'
miRNA:   3'- gGuaCGGCA--CGCGGa------GCU--UGGCAa---CG- -5'
26807 3' -55 NC_005808.1 + 13383 0.68 0.576171
Target:  5'- gCCAUGCCcaGCGCgCgguuguaggCGGcAUCGUUGCg -3'
miRNA:   3'- -GGUACGGcaCGCG-Ga--------GCU-UGGCAACG- -5'
26807 3' -55 NC_005808.1 + 35042 0.68 0.587195
Target:  5'- uCCAaGCCGgugGCGCCgcagaUCGAGCaCGccGCc -3'
miRNA:   3'- -GGUaCGGCa--CGCGG-----AGCUUG-GCaaCG- -5'
26807 3' -55 NC_005808.1 + 23013 0.67 0.598258
Target:  5'- gCC-UGCUGcUGCGCCUgcuguUGGGCUuGUUGCu -3'
miRNA:   3'- -GGuACGGC-ACGCGGA-----GCUUGG-CAACG- -5'
26807 3' -55 NC_005808.1 + 3727 0.67 0.598258
Target:  5'- cCCGUGCCGUucaCGCCgguggUGGGCaCGUcggUGCc -3'
miRNA:   3'- -GGUACGGCAc--GCGGa----GCUUG-GCA---ACG- -5'
26807 3' -55 NC_005808.1 + 19875 0.67 0.598258
Target:  5'- gCGUGCCGaaggcgucgcGCGCCUUcuuGGCCGUgGCa -3'
miRNA:   3'- gGUACGGCa---------CGCGGAGc--UUGGCAaCG- -5'
26807 3' -55 NC_005808.1 + 40332 0.67 0.60824
Target:  5'- cCCAUcgucaacGUgGUGCGCgUCGAACUGccgGCc -3'
miRNA:   3'- -GGUA-------CGgCACGCGgAGCUUGGCaa-CG- -5'
26807 3' -55 NC_005808.1 + 8168 0.67 0.60935
Target:  5'- uCCcUGCgCGUGCGCC-CGGauGCUGccgGCg -3'
miRNA:   3'- -GGuACG-GCACGCGGaGCU--UGGCaa-CG- -5'
26807 3' -55 NC_005808.1 + 1708 0.67 0.620462
Target:  5'- ---cGCCGUGgGCCggCGuGCCGgcgaggGCg -3'
miRNA:   3'- gguaCGGCACgCGGa-GCuUGGCaa----CG- -5'
26807 3' -55 NC_005808.1 + 31516 0.68 0.565194
Target:  5'- gCGUGCUGcUGgGCCUCGcugUGUUGCc -3'
miRNA:   3'- gGUACGGC-ACgCGGAGCuugGCAACG- -5'
26807 3' -55 NC_005808.1 + 20739 0.68 0.532625
Target:  5'- aCAUGCUGcugGCGCCguaGAGgCGcUGCg -3'
miRNA:   3'- gGUACGGCa--CGCGGag-CUUgGCaACG- -5'
26807 3' -55 NC_005808.1 + 4311 0.69 0.508119
Target:  5'- aCCAgcuUGCCGUugaccuccacgaugGUgccaGCCUUGAugcugGCCGUUGCg -3'
miRNA:   3'- -GGU---ACGGCA--------------CG----CGGAGCU-----UGGCAACG- -5'
26807 3' -55 NC_005808.1 + 23756 0.84 0.054894
Target:  5'- gCCAUGCCG-GCGCCacCGGGCCGaUGCg -3'
miRNA:   3'- -GGUACGGCaCGCGGa-GCUUGGCaACG- -5'
26807 3' -55 NC_005808.1 + 3784 0.73 0.300328
Target:  5'- gUCGUGCCGaaagccaGCGCCUgGAAUuCGUUGUa -3'
miRNA:   3'- -GGUACGGCa------CGCGGAgCUUG-GCAACG- -5'
26807 3' -55 NC_005808.1 + 12297 0.72 0.348316
Target:  5'- gCGUGCCGgcuacgGCgGCgUCGAAUuCGUUGCu -3'
miRNA:   3'- gGUACGGCa-----CG-CGgAGCUUG-GCAACG- -5'
26807 3' -55 NC_005808.1 + 14719 0.7 0.420384
Target:  5'- uCCAUGCCcUGCGCC-CGGuaGCCccagGCa -3'
miRNA:   3'- -GGUACGGcACGCGGaGCU--UGGcaa-CG- -5'
26807 3' -55 NC_005808.1 + 15851 0.7 0.439761
Target:  5'- uCCGUGUCGUGCugguGCCacgcgcCGAuCUGUUGCu -3'
miRNA:   3'- -GGUACGGCACG----CGGa-----GCUuGGCAACG- -5'
26807 3' -55 NC_005808.1 + 8415 0.69 0.489279
Target:  5'- gCCAggGCCGUGCgcuugucuacgGCCUUGAggcuuugGCCcUUGCg -3'
miRNA:   3'- -GGUa-CGGCACG-----------CGGAGCU-------UGGcAACG- -5'
26807 3' -55 NC_005808.1 + 19484 0.69 0.499706
Target:  5'- gCCAggUGCCGguggGCagGCCgcugCGAACCGUggucuugUGCu -3'
miRNA:   3'- -GGU--ACGGCa---CG--CGGa---GCUUGGCA-------ACG- -5'
26807 3' -55 NC_005808.1 + 10928 0.69 0.500755
Target:  5'- ---cGCCGguuugcaGgGCCUCGGGCaGUUGCg -3'
miRNA:   3'- gguaCGGCa------CgCGGAGCUUGgCAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.