Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26807 | 3' | -55 | NC_005808.1 | + | 10671 | 0.74 | 0.257611 |
Target: 5'- gCGUGUCGagcaGCGCCUCGAaacGCCGcagGCa -3' miRNA: 3'- gGUACGGCa---CGCGGAGCU---UGGCaa-CG- -5' |
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26807 | 3' | -55 | NC_005808.1 | + | 9393 | 0.66 | 0.664915 |
Target: 5'- gCCGUGCCGcGauaGCCagCGGugGCCGU-GCc -3' miRNA: 3'- -GGUACGGCaCg--CGGa-GCU--UGGCAaCG- -5' |
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26807 | 3' | -55 | NC_005808.1 | + | 19174 | 0.66 | 0.686995 |
Target: 5'- uCCcgGCCG-GCGUCgcaCuGACCGgcGCg -3' miRNA: 3'- -GGuaCGGCaCGCGGa--GcUUGGCaaCG- -5' |
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26807 | 3' | -55 | NC_005808.1 | + | 2761 | 0.65 | 0.708861 |
Target: 5'- gCGUGCCGaccacUGCcgacaCCUCGA--CGUUGCg -3' miRNA: 3'- gGUACGGC-----ACGc----GGAGCUugGCAACG- -5' |
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26807 | 3' | -55 | NC_005808.1 | + | 38337 | 0.68 | 0.554272 |
Target: 5'- aCCAUGCCG-GCGCUgacGGCCG--GCa -3' miRNA: 3'- -GGUACGGCaCGCGGagcUUGGCaaCG- -5' |
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26807 | 3' | -55 | NC_005808.1 | + | 8024 | 0.68 | 0.587195 |
Target: 5'- gCCAgcuucGCCgGUGacaGCCUCGAcgcucaACCGcUGCu -3' miRNA: 3'- -GGUa----CGG-CACg--CGGAGCU------UGGCaACG- -5' |
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26807 | 3' | -55 | NC_005808.1 | + | 9153 | 0.68 | 0.587195 |
Target: 5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3' miRNA: 3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5' |
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26807 | 3' | -55 | NC_005808.1 | + | 9201 | 0.68 | 0.587195 |
Target: 5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3' miRNA: 3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5' |
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26807 | 3' | -55 | NC_005808.1 | + | 9345 | 0.68 | 0.587195 |
Target: 5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3' miRNA: 3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5' |
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26807 | 3' | -55 | NC_005808.1 | + | 23148 | 0.66 | 0.653822 |
Target: 5'- aCUAUGgCGUGCaGCC-CGAgaagucccgcACCGU-GCa -3' miRNA: 3'- -GGUACgGCACG-CGGaGCU----------UGGCAaCG- -5' |
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26807 | 3' | -55 | NC_005808.1 | + | 23884 | 0.67 | 0.60935 |
Target: 5'- cCCGUGCCGccguaccgaUGCGCUgcugCuGACCGagGCc -3' miRNA: 3'- -GGUACGGC---------ACGCGGa---GcUUGGCaaCG- -5' |
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26807 | 3' | -55 | NC_005808.1 | + | 9297 | 0.68 | 0.587195 |
Target: 5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3' miRNA: 3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5' |
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26807 | 3' | -55 | NC_005808.1 | + | 9009 | 0.7 | 0.439761 |
Target: 5'- gCCGUGCCGgauuCGCCagCGGugGCCGUgccGCg -3' miRNA: 3'- -GGUACGGCac--GCGGa-GCU--UGGCAa--CG- -5' |
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26807 | 3' | -55 | NC_005808.1 | + | 14886 | 0.67 | 0.642708 |
Target: 5'- uCCAUGaCCG-GCGg--CGAGCCGcUGCc -3' miRNA: 3'- -GGUAC-GGCaCGCggaGCUUGGCaACG- -5' |
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26807 | 3' | -55 | NC_005808.1 | + | 9057 | 0.7 | 0.439761 |
Target: 5'- gCCGUGCCGgauuCGCCagCGGugGCCGUgccGCg -3' miRNA: 3'- -GGUACGGCac--GCGGa-GCU--UGGCAa--CG- -5' |
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26807 | 3' | -55 | NC_005808.1 | + | 9249 | 0.68 | 0.587195 |
Target: 5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3' miRNA: 3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5' |
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26807 | 3' | -55 | NC_005808.1 | + | 34406 | 0.66 | 0.653822 |
Target: 5'- ---gGCCGUGCGCgaUGAaaucGCCGgcaGCa -3' miRNA: 3'- gguaCGGCACGCGgaGCU----UGGCaa-CG- -5' |
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26807 | 3' | -55 | NC_005808.1 | + | 41917 | 0.66 | 0.675976 |
Target: 5'- gCCcgGCCG-GCGCC----GCCGUagGCg -3' miRNA: 3'- -GGuaCGGCaCGCGGagcuUGGCAa-CG- -5' |
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26807 | 3' | -55 | NC_005808.1 | + | 8944 | 0.69 | 0.51129 |
Target: 5'- gCCGUGCCGgauuCGCCagCGGugGCCGU-GCc -3' miRNA: 3'- -GGUACGGCac--GCGGa-GCU--UGGCAaCG- -5' |
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26807 | 3' | -55 | NC_005808.1 | + | 9105 | 0.68 | 0.587195 |
Target: 5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3' miRNA: 3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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