miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26807 3' -55 NC_005808.1 + 1708 0.67 0.620462
Target:  5'- ---cGCCGUGgGCCggCGuGCCGgcgaggGCg -3'
miRNA:   3'- gguaCGGCACgCGGa-GCuUGGCaa----CG- -5'
26807 3' -55 NC_005808.1 + 1758 0.66 0.693582
Target:  5'- gUCAUgGCCGgccUGCGCCuggcgcgUCGGGCCGauacguucgaugauUUGCu -3'
miRNA:   3'- -GGUA-CGGC---ACGCGG-------AGCUUGGC--------------AACG- -5'
26807 3' -55 NC_005808.1 + 2761 0.65 0.708861
Target:  5'- gCGUGCCGaccacUGCcgacaCCUCGA--CGUUGCg -3'
miRNA:   3'- gGUACGGC-----ACGc----GGAGCUugGCAACG- -5'
26807 3' -55 NC_005808.1 + 3727 0.67 0.598258
Target:  5'- cCCGUGCCGUucaCGCCgguggUGGGCaCGUcggUGCc -3'
miRNA:   3'- -GGUACGGCAc--GCGGa----GCUUG-GCA---ACG- -5'
26807 3' -55 NC_005808.1 + 3784 0.73 0.300328
Target:  5'- gUCGUGCCGaaagccaGCGCCUgGAAUuCGUUGUa -3'
miRNA:   3'- -GGUACGGCa------CGCGGAgCUUG-GCAACG- -5'
26807 3' -55 NC_005808.1 + 4262 0.67 0.620462
Target:  5'- gCcgGCCGUcaGCGCCggcauggUGAugGCCGUgucgGCg -3'
miRNA:   3'- gGuaCGGCA--CGCGGa------GCU--UGGCAa---CG- -5'
26807 3' -55 NC_005808.1 + 4311 0.69 0.508119
Target:  5'- aCCAgcuUGCCGUugaccuccacgaugGUgccaGCCUUGAugcugGCCGUUGCg -3'
miRNA:   3'- -GGU---ACGGCA--------------CG----CGGAGCU-----UGGCAACG- -5'
26807 3' -55 NC_005808.1 + 8024 0.68 0.587195
Target:  5'- gCCAgcuucGCCgGUGacaGCCUCGAcgcucaACCGcUGCu -3'
miRNA:   3'- -GGUa----CGG-CACg--CGGAGCU------UGGCaACG- -5'
26807 3' -55 NC_005808.1 + 8168 0.67 0.60935
Target:  5'- uCCcUGCgCGUGCGCC-CGGauGCUGccgGCg -3'
miRNA:   3'- -GGuACG-GCACGCGGaGCU--UGGCaa-CG- -5'
26807 3' -55 NC_005808.1 + 8415 0.69 0.489279
Target:  5'- gCCAggGCCGUGCgcuugucuacgGCCUUGAggcuuugGCCcUUGCg -3'
miRNA:   3'- -GGUa-CGGCACG-----------CGGAGCU-------UGGcAACG- -5'
26807 3' -55 NC_005808.1 + 8944 0.69 0.51129
Target:  5'- gCCGUGCCGgauuCGCCagCGGugGCCGU-GCc -3'
miRNA:   3'- -GGUACGGCac--GCGGa-GCU--UGGCAaCG- -5'
26807 3' -55 NC_005808.1 + 9009 0.7 0.439761
Target:  5'- gCCGUGCCGgauuCGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCac--GCGGa-GCU--UGGCAa--CG- -5'
26807 3' -55 NC_005808.1 + 9057 0.7 0.439761
Target:  5'- gCCGUGCCGgauuCGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCac--GCGGa-GCU--UGGCAa--CG- -5'
26807 3' -55 NC_005808.1 + 9105 0.68 0.587195
Target:  5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5'
26807 3' -55 NC_005808.1 + 9153 0.68 0.587195
Target:  5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5'
26807 3' -55 NC_005808.1 + 9201 0.68 0.587195
Target:  5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5'
26807 3' -55 NC_005808.1 + 9249 0.68 0.587195
Target:  5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5'
26807 3' -55 NC_005808.1 + 9297 0.68 0.587195
Target:  5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5'
26807 3' -55 NC_005808.1 + 9345 0.68 0.587195
Target:  5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5'
26807 3' -55 NC_005808.1 + 9393 0.66 0.664915
Target:  5'- gCCGUGCCGcGauaGCCagCGGugGCCGU-GCc -3'
miRNA:   3'- -GGUACGGCaCg--CGGa-GCU--UGGCAaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.