miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26807 3' -55 NC_005808.1 + 41917 0.66 0.675976
Target:  5'- gCCcgGCCG-GCGCC----GCCGUagGCg -3'
miRNA:   3'- -GGuaCGGCaCGCGGagcuUGGCAa-CG- -5'
26807 3' -55 NC_005808.1 + 40332 0.67 0.60824
Target:  5'- cCCAUcgucaacGUgGUGCGCgUCGAACUGccgGCc -3'
miRNA:   3'- -GGUA-------CGgCACGCGgAGCUUGGCaa-CG- -5'
26807 3' -55 NC_005808.1 + 40222 1.13 0.000489
Target:  5'- gCCAUGCCGUGCGCCUCGAACCGUUGCc -3'
miRNA:   3'- -GGUACGGCACGCGGAGCUUGGCAACG- -5'
26807 3' -55 NC_005808.1 + 38337 0.68 0.554272
Target:  5'- aCCAUGCCG-GCGCUgacGGCCG--GCa -3'
miRNA:   3'- -GGUACGGCaCGCGGagcUUGGCaaCG- -5'
26807 3' -55 NC_005808.1 + 37033 0.66 0.697961
Target:  5'- gCCAgcGuuG-GCGCCgUCGAuACCGUgGCg -3'
miRNA:   3'- -GGUa-CggCaCGCGG-AGCU-UGGCAaCG- -5'
26807 3' -55 NC_005808.1 + 36257 0.66 0.675976
Target:  5'- uUCggGCCGgGCGCUUUG-GCUGggGCg -3'
miRNA:   3'- -GGuaCGGCaCGCGGAGCuUGGCaaCG- -5'
26807 3' -55 NC_005808.1 + 35042 0.68 0.587195
Target:  5'- uCCAaGCCGgugGCGCCgcagaUCGAGCaCGccGCc -3'
miRNA:   3'- -GGUaCGGCa--CGCGG-----AGCUUG-GCaaCG- -5'
26807 3' -55 NC_005808.1 + 34831 0.66 0.686995
Target:  5'- ---cGCCG-GCGCagaUCGcGCCGgUGCu -3'
miRNA:   3'- gguaCGGCaCGCGg--AGCuUGGCaACG- -5'
26807 3' -55 NC_005808.1 + 34755 0.66 0.664915
Target:  5'- uUCAaGCgCGUGCGCCUgGucAUCGU-GCa -3'
miRNA:   3'- -GGUaCG-GCACGCGGAgCu-UGGCAaCG- -5'
26807 3' -55 NC_005808.1 + 34406 0.66 0.653822
Target:  5'- ---gGCCGUGCGCgaUGAaaucGCCGgcaGCa -3'
miRNA:   3'- gguaCGGCACGCGgaGCU----UGGCaa-CG- -5'
26807 3' -55 NC_005808.1 + 33053 0.67 0.642708
Target:  5'- cCCGcgugcUGUCGUGCGCUucaUCGggUCGc-GCa -3'
miRNA:   3'- -GGU-----ACGGCACGCGG---AGCuuGGCaaCG- -5'
26807 3' -55 NC_005808.1 + 31516 0.68 0.565194
Target:  5'- gCGUGCUGcUGgGCCUCGcugUGUUGCc -3'
miRNA:   3'- gGUACGGC-ACgCGGAGCuugGCAACG- -5'
26807 3' -55 NC_005808.1 + 30297 0.66 0.675976
Target:  5'- ---cGUCGgguaGCGCCccugCGAGCCGcuUUGCg -3'
miRNA:   3'- gguaCGGCa---CGCGGa---GCUUGGC--AACG- -5'
26807 3' -55 NC_005808.1 + 28665 0.67 0.642708
Target:  5'- uCgGUGCCG-GCgGCCUCGccAGCgCGgcGCg -3'
miRNA:   3'- -GgUACGGCaCG-CGGAGC--UUG-GCaaCG- -5'
26807 3' -55 NC_005808.1 + 28275 0.66 0.686995
Target:  5'- aCCAUGaCCGcGCGCUg-GGACaCGgcGCa -3'
miRNA:   3'- -GGUAC-GGCaCGCGGagCUUG-GCaaCG- -5'
26807 3' -55 NC_005808.1 + 27498 0.67 0.642708
Target:  5'- -gAUGCCG-GCgGCCUCG-GCCGccaGCu -3'
miRNA:   3'- ggUACGGCaCG-CGGAGCuUGGCaa-CG- -5'
26807 3' -55 NC_005808.1 + 26823 0.67 0.60935
Target:  5'- uCUAUGCCGUcGUGCgUCGcACCauugGCg -3'
miRNA:   3'- -GGUACGGCA-CGCGgAGCuUGGcaa-CG- -5'
26807 3' -55 NC_005808.1 + 23884 0.67 0.60935
Target:  5'- cCCGUGCCGccguaccgaUGCGCUgcugCuGACCGagGCc -3'
miRNA:   3'- -GGUACGGC---------ACGCGGa---GcUUGGCaaCG- -5'
26807 3' -55 NC_005808.1 + 23756 0.84 0.054894
Target:  5'- gCCAUGCCG-GCGCCacCGGGCCGaUGCg -3'
miRNA:   3'- -GGUACGGCaCGCGGa-GCUUGGCaACG- -5'
26807 3' -55 NC_005808.1 + 23148 0.66 0.653822
Target:  5'- aCUAUGgCGUGCaGCC-CGAgaagucccgcACCGU-GCa -3'
miRNA:   3'- -GGUACgGCACG-CGGaGCU----------UGGCAaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.