miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26810 5' -53.9 NC_005808.1 + 41507 1.11 0.000676
Target:  5'- cUACCGCCGCCAACAUGAAGUACGCGCg -3'
miRNA:   3'- -AUGGCGGCGGUUGUACUUCAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 27468 0.86 0.040706
Target:  5'- -uCCGCCGCCAGCAUGggGU-CGgGCc -3'
miRNA:   3'- auGGCGGCGGUUGUACuuCAuGCgCG- -5'
26810 5' -53.9 NC_005808.1 + 15106 0.76 0.198433
Target:  5'- gGCCgagGCCGCCGGCAUccucgcguGGUGCGUGCg -3'
miRNA:   3'- aUGG---CGGCGGUUGUAcu------UCAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 22332 0.76 0.215505
Target:  5'- gUGCCGaacgCGCCGaguucuucguACAUGGAGUGCaGCGCg -3'
miRNA:   3'- -AUGGCg---GCGGU----------UGUACUUCAUG-CGCG- -5'
26810 5' -53.9 NC_005808.1 + 14555 0.75 0.240212
Target:  5'- gACCGUCGCCGACGUGuucuucgGCGaCGCc -3'
miRNA:   3'- aUGGCGGCGGUUGUACuuca---UGC-GCG- -5'
26810 5' -53.9 NC_005808.1 + 8751 0.75 0.240212
Target:  5'- cGCUaCCGUCAACAUGGAauuUGCGCGCg -3'
miRNA:   3'- aUGGcGGCGGUUGUACUUc--AUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 31502 0.74 0.260259
Target:  5'- gGCCGCaGCCGACA--AGGUgcucGCGCGCg -3'
miRNA:   3'- aUGGCGgCGGUUGUacUUCA----UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 6626 0.74 0.272213
Target:  5'- -uCCGCCGCCAGCuucgcgcgcuuggccGGAGUGucCGCGCu -3'
miRNA:   3'- auGGCGGCGGUUGua-------------CUUCAU--GCGCG- -5'
26810 5' -53.9 NC_005808.1 + 20174 0.73 0.312305
Target:  5'- cGCCGCCGUCAagGCGUGGcuGGcgaacgucACGCGCu -3'
miRNA:   3'- aUGGCGGCGGU--UGUACU--UCa-------UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 803 0.73 0.320355
Target:  5'- aAUCGCCGUCAGCAggUGGcugggcuugAGcGCGCGCa -3'
miRNA:   3'- aUGGCGGCGGUUGU--ACU---------UCaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 34382 0.72 0.336916
Target:  5'- gGCCGCCGaCCAGCGcGAcuacgAGgcCGUGCg -3'
miRNA:   3'- aUGGCGGC-GGUUGUaCU-----UCauGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 16841 0.72 0.345428
Target:  5'- uUGCCGCCGcCCAGCA------GCGCGCc -3'
miRNA:   3'- -AUGGCGGC-GGUUGUacuucaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 28554 0.72 0.368273
Target:  5'- uUGCgGCCGCCGGCcaucgcgGCGCGCa -3'
miRNA:   3'- -AUGgCGGCGGUUGuacuucaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 33371 0.72 0.371878
Target:  5'- aACUGCCGCCGggcgcgccGCA-GAAcGUGCGcCGCg -3'
miRNA:   3'- aUGGCGGCGGU--------UGUaCUU-CAUGC-GCG- -5'
26810 5' -53.9 NC_005808.1 + 33269 0.72 0.371878
Target:  5'- aUGCCGCCGCCcgccGCGccGAcGUGCGcCGCc -3'
miRNA:   3'- -AUGGCGGCGGu---UGUa-CUuCAUGC-GCG- -5'
26810 5' -53.9 NC_005808.1 + 22833 0.71 0.380997
Target:  5'- cGCCGCgcUGCCGACAgccGAcAGcGCGCGCu -3'
miRNA:   3'- aUGGCG--GCGGUUGUa--CU-UCaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 34421 0.71 0.399675
Target:  5'- aAUCGCCGgCAGCAUccGGgcgcACGCGCa -3'
miRNA:   3'- aUGGCGGCgGUUGUAcuUCa---UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 8049 0.71 0.399675
Target:  5'- uUGCCGCCGUC--CAUGAc--GCGCGCc -3'
miRNA:   3'- -AUGGCGGCGGuuGUACUucaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 14771 0.71 0.409232
Target:  5'- gGCCGgCGCCAccGCggGcAGcGCGCGCg -3'
miRNA:   3'- aUGGCgGCGGU--UGuaCuUCaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 21935 0.71 0.409232
Target:  5'- cACCGCCGaccaaggcCCAACggGGcacAGUGCGCGg -3'
miRNA:   3'- aUGGCGGC--------GGUUGuaCU---UCAUGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.