Results 21 - 40 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26810 | 5' | -53.9 | NC_005808.1 | + | 30854 | 0.71 | 0.409232 |
Target: 5'- aACCuGUCGCCGAUcaguucgcacaAUGggGUGCGCa- -3' miRNA: 3'- aUGG-CGGCGGUUG-----------UACuuCAUGCGcg -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 33939 | 0.71 | 0.418929 |
Target: 5'- aGCCGCUGCacACAgcGAGUACgGCGCg -3' miRNA: 3'- aUGGCGGCGguUGUacUUCAUG-CGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 21907 | 0.7 | 0.448836 |
Target: 5'- -cUCGUCGuCCAGCccAUaGAGUGCGCGCa -3' miRNA: 3'- auGGCGGC-GGUUG--UAcUUCAUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 17203 | 0.7 | 0.448836 |
Target: 5'- cGCCGCCGCCGAag-GAGcGUugcaggACGCGg -3' miRNA: 3'- aUGGCGGCGGUUguaCUU-CA------UGCGCg -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 27718 | 0.7 | 0.448836 |
Target: 5'- gGCuCGCCGCCggUcauggacuugAUGAGGcccuCGCGCa -3' miRNA: 3'- aUG-GCGGCGGuuG----------UACUUCau--GCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 15765 | 0.7 | 0.459065 |
Target: 5'- cGuuGCCGCCAAU----GGUGCGaCGCa -3' miRNA: 3'- aUggCGGCGGUUGuacuUCAUGC-GCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 41454 | 0.7 | 0.473591 |
Target: 5'- gACCGCCGCCGuaGCGcGAgcuaacgguuacaccGGgccgAUGCGCg -3' miRNA: 3'- aUGGCGGCGGU--UGUaCU---------------UCa---UGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 18846 | 0.69 | 0.501159 |
Target: 5'- gGCCcgguGgCGCCGGCAUGgcGcugcUGCGCGCc -3' miRNA: 3'- aUGG----CgGCGGUUGUACuuC----AUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 8293 | 0.69 | 0.501159 |
Target: 5'- cGCUGCCggggcagugcaGCCAGC----GGUGCGCGCu -3' miRNA: 3'- aUGGCGG-----------CGGUUGuacuUCAUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 28323 | 0.69 | 0.505464 |
Target: 5'- cAUCGCCGaCAGCAUGGugcagcaggccaaccAGuUGCGCGUg -3' miRNA: 3'- aUGGCGGCgGUUGUACU---------------UC-AUGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 41566 | 0.69 | 0.510867 |
Target: 5'- aUGCUGCCGCCGGcCGUGGccuuccaGGUguucgACGCuGCg -3' miRNA: 3'- -AUGGCGGCGGUU-GUACU-------UCA-----UGCG-CG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 1590 | 0.69 | 0.51195 |
Target: 5'- gGCCGCCGCCuuCcugGUGGucgAGUGCGUugguuuGCg -3' miRNA: 3'- aUGGCGGCGGuuG---UACU---UCAUGCG------CG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 23561 | 0.69 | 0.51195 |
Target: 5'- gGCCGacauCGCCGGCA---GGUGCGgGCg -3' miRNA: 3'- aUGGCg---GCGGUUGUacuUCAUGCgCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 19489 | 0.69 | 0.521743 |
Target: 5'- uUACCGCUGUCGcCGUGGGcgccgccGUugGCGUc -3' miRNA: 3'- -AUGGCGGCGGUuGUACUU-------CAugCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 23357 | 0.69 | 0.543755 |
Target: 5'- -cUCGCCGCCGAUgaacacgGUGgcGUGCcCGCu -3' miRNA: 3'- auGGCGGCGGUUG-------UACuuCAUGcGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 13060 | 0.69 | 0.544865 |
Target: 5'- gUGCgGCCGUCuGCAUGuuGaaUugGCGCu -3' miRNA: 3'- -AUGgCGGCGGuUGUACuuC--AugCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 17444 | 0.69 | 0.544865 |
Target: 5'- gGCC-CCGCCAGCAUcGAGGccAgGUGCc -3' miRNA: 3'- aUGGcGGCGGUUGUA-CUUCa-UgCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 38861 | 0.69 | 0.544865 |
Target: 5'- gUGCCGCCcucaucaaauccGCgAGCAUGAGcggAUGCGCc -3' miRNA: 3'- -AUGGCGG------------CGgUUGUACUUca-UGCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 36056 | 0.69 | 0.544865 |
Target: 5'- gGCUGCuacgucaaCGCCAGCAUcGAAcuGUGgGCGCa -3' miRNA: 3'- aUGGCG--------GCGGUUGUA-CUU--CAUgCGCG- -5' |
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26810 | 5' | -53.9 | NC_005808.1 | + | 38978 | 0.68 | 0.555992 |
Target: 5'- uUACCaCCGCCAGC--GAAGcaaaAUGCGCg -3' miRNA: 3'- -AUGGcGGCGGUUGuaCUUCa---UGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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