miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26810 5' -53.9 NC_005808.1 + 12993 0.68 0.555992
Target:  5'- aACCGcCCGCCGuucuCGUacAGgcCGCGCa -3'
miRNA:   3'- aUGGC-GGCGGUu---GUAcuUCauGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 25534 0.68 0.567185
Target:  5'- uUGCCGCCGCCGGCA--------GCGCc -3'
miRNA:   3'- -AUGGCGGCGGUUGUacuucaugCGCG- -5'
26810 5' -53.9 NC_005808.1 + 14022 0.68 0.567185
Target:  5'- --aCGCUGCCggUGgccGAcGUGCGCGCc -3'
miRNA:   3'- augGCGGCGGuuGUa--CUuCAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 28280 0.68 0.567185
Target:  5'- gACCGCgCGCUggGACAcggcgcagaacuUGAAGaacucgGCGCGCu -3'
miRNA:   3'- aUGGCG-GCGG--UUGU------------ACUUCa-----UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 33832 0.68 0.567185
Target:  5'- cGCCGCgUGCUGcccgaagcggcACGUGAA-UACGCGCg -3'
miRNA:   3'- aUGGCG-GCGGU-----------UGUACUUcAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 22303 0.68 0.567185
Target:  5'- gGCCGCCGagCAACccGcuacuGGUGCGgGCa -3'
miRNA:   3'- aUGGCGGCg-GUUGuaCu----UCAUGCgCG- -5'
26810 5' -53.9 NC_005808.1 + 1157 0.68 0.57618
Target:  5'- cGCuCGCCGUCgAugGUGAAGgacagccguauCGCGCu -3'
miRNA:   3'- aUG-GCGGCGG-UugUACUUCau---------GCGCG- -5'
26810 5' -53.9 NC_005808.1 + 25041 0.68 0.577307
Target:  5'- cACCGgCGCCGACAucauucUGAccaaucaAGUcaacgcggugGCGCGCu -3'
miRNA:   3'- aUGGCgGCGGUUGU------ACU-------UCA----------UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 10172 0.68 0.578434
Target:  5'- cGCUGCCGUCGucuugGCA-GAcGUgGCGCGCg -3'
miRNA:   3'- aUGGCGGCGGU-----UGUaCUuCA-UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 40441 0.68 0.578434
Target:  5'- aACUGuUCGCCAACGUGuacgGCgGCGCg -3'
miRNA:   3'- aUGGC-GGCGGUUGUACuucaUG-CGCG- -5'
26810 5' -53.9 NC_005808.1 + 37002 0.68 0.578434
Target:  5'- cACC-CCGCCGAgugggccaaauuCGUGGAGUAUGCcgGCc -3'
miRNA:   3'- aUGGcGGCGGUU------------GUACUUCAUGCG--CG- -5'
26810 5' -53.9 NC_005808.1 + 18685 0.68 0.578434
Target:  5'- cGCCuaUGCCGGCAUgGAAGccGCGgGCg -3'
miRNA:   3'- aUGGcgGCGGUUGUA-CUUCa-UGCgCG- -5'
26810 5' -53.9 NC_005808.1 + 28475 0.68 0.578434
Target:  5'- aGCCGCUgGCCGACG---AGUACG-GCg -3'
miRNA:   3'- aUGGCGG-CGGUUGUacuUCAUGCgCG- -5'
26810 5' -53.9 NC_005808.1 + 19079 0.68 0.58973
Target:  5'- --gCGCCGCCug---GAAG-GCGCGCu -3'
miRNA:   3'- augGCGGCGGuuguaCUUCaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 13282 0.68 0.58973
Target:  5'- gACCGCCaCCGcCuUGAAGUGCuGgGCa -3'
miRNA:   3'- aUGGCGGcGGUuGuACUUCAUG-CgCG- -5'
26810 5' -53.9 NC_005808.1 + 14469 0.68 0.58973
Target:  5'- cUGCUGCCGcCCGACcaGgcGUAcCGCGUg -3'
miRNA:   3'- -AUGGCGGC-GGUUGuaCuuCAU-GCGCG- -5'
26810 5' -53.9 NC_005808.1 + 5357 0.68 0.58973
Target:  5'- uUGgCGacaGCCAACAUGcucgacAGGUGCGUGCu -3'
miRNA:   3'- -AUgGCgg-CGGUUGUAC------UUCAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 17782 0.68 0.601065
Target:  5'- -gUCGCgCGCgAACGgauaGAAGcGCGCGCa -3'
miRNA:   3'- auGGCG-GCGgUUGUa---CUUCaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 38360 0.68 0.601065
Target:  5'- cACCGacuaCGCCAucuacgucugcgACgAUGGcacGGUGCGCGCc -3'
miRNA:   3'- aUGGCg---GCGGU------------UG-UACU---UCAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 19049 0.68 0.601065
Target:  5'- gGCCGCCGgCGGCGUcGAucaGCGUGUc -3'
miRNA:   3'- aUGGCGGCgGUUGUA-CUucaUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.