miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26810 5' -53.9 NC_005808.1 + 22332 0.76 0.215505
Target:  5'- gUGCCGaacgCGCCGaguucuucguACAUGGAGUGCaGCGCg -3'
miRNA:   3'- -AUGGCg---GCGGU----------UGUACUUCAUG-CGCG- -5'
26810 5' -53.9 NC_005808.1 + 41507 1.11 0.000676
Target:  5'- cUACCGCCGCCAACAUGAAGUACGCGCg -3'
miRNA:   3'- -AUGGCGGCGGUUGUACUUCAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 23357 0.69 0.543755
Target:  5'- -cUCGCCGCCGAUgaacacgGUGgcGUGCcCGCu -3'
miRNA:   3'- auGGCGGCGGUUG-------UACuuCAUGcGCG- -5'
26810 5' -53.9 NC_005808.1 + 13060 0.69 0.544865
Target:  5'- gUGCgGCCGUCuGCAUGuuGaaUugGCGCu -3'
miRNA:   3'- -AUGgCGGCGGuUGUACuuC--AugCGCG- -5'
26810 5' -53.9 NC_005808.1 + 17444 0.69 0.544865
Target:  5'- gGCC-CCGCCAGCAUcGAGGccAgGUGCc -3'
miRNA:   3'- aUGGcGGCGGUUGUA-CUUCa-UgCGCG- -5'
26810 5' -53.9 NC_005808.1 + 42287 0.67 0.612428
Target:  5'- gUACgGCaCGCCcugGACG-GAAGaGCGCGCc -3'
miRNA:   3'- -AUGgCG-GCGG---UUGUaCUUCaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 1057 0.67 0.612428
Target:  5'- -gUCGCCGCgAACcgGcguccAGUaACGCGCg -3'
miRNA:   3'- auGGCGGCGgUUGuaCu----UCA-UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 19049 0.68 0.601065
Target:  5'- gGCCGCCGgCGGCGUcGAucaGCGUGUc -3'
miRNA:   3'- aUGGCGGCgGUUGUA-CUucaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 17782 0.68 0.601065
Target:  5'- -gUCGCgCGCgAACGgauaGAAGcGCGCGCa -3'
miRNA:   3'- auGGCG-GCGgUUGUa---CUUCaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 5357 0.68 0.58973
Target:  5'- uUGgCGacaGCCAACAUGcucgacAGGUGCGUGCu -3'
miRNA:   3'- -AUgGCgg-CGGUUGUAC------UUCAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 37002 0.68 0.578434
Target:  5'- cACC-CCGCCGAgugggccaaauuCGUGGAGUAUGCcgGCc -3'
miRNA:   3'- aUGGcGGCGGUU------------GUACUUCAUGCG--CG- -5'
26810 5' -53.9 NC_005808.1 + 28280 0.68 0.567185
Target:  5'- gACCGCgCGCUggGACAcggcgcagaacuUGAAGaacucgGCGCGCu -3'
miRNA:   3'- aUGGCG-GCGG--UUGU------------ACUUCa-----UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 36056 0.69 0.544865
Target:  5'- gGCUGCuacgucaaCGCCAGCAUcGAAcuGUGgGCGCa -3'
miRNA:   3'- aUGGCG--------GCGGUUGUA-CUU--CAUgCGCG- -5'
26810 5' -53.9 NC_005808.1 + 38861 0.69 0.544865
Target:  5'- gUGCCGCCcucaucaaauccGCgAGCAUGAGcggAUGCGCc -3'
miRNA:   3'- -AUGGCGG------------CGgUUGUACUUca-UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 38978 0.68 0.555992
Target:  5'- uUACCaCCGCCAGC--GAAGcaaaAUGCGCg -3'
miRNA:   3'- -AUGGcGGCGGUUGuaCUUCa---UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 12993 0.68 0.555992
Target:  5'- aACCGcCCGCCGuucuCGUacAGgcCGCGCa -3'
miRNA:   3'- aUGGC-GGCGGUu---GUAcuUCauGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 25534 0.68 0.567185
Target:  5'- uUGCCGCCGCCGGCA--------GCGCc -3'
miRNA:   3'- -AUGGCGGCGGUUGUacuucaugCGCG- -5'
26810 5' -53.9 NC_005808.1 + 37808 0.66 0.725233
Target:  5'- cAgCGCCaGCCGGCGUGc--UGgGCGCa -3'
miRNA:   3'- aUgGCGG-CGGUUGUACuucAUgCGCG- -5'
26810 5' -53.9 NC_005808.1 + 15106 0.76 0.198433
Target:  5'- gGCCgagGCCGCCGGCAUccucgcguGGUGCGUGCg -3'
miRNA:   3'- aUGG---CGGCGGUUGUAcu------UCAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 8751 0.75 0.240212
Target:  5'- cGCUaCCGUCAACAUGGAauuUGCGCGCg -3'
miRNA:   3'- aUGGcGGCGGUUGUACUUc--AUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.