miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26810 5' -53.9 NC_005808.1 + 15016 0.66 0.703072
Target:  5'- cUGgCGCCGCCugcuGCcgGugcccuuUACGCGCa -3'
miRNA:   3'- -AUgGCGGCGGu---UGuaCuuc----AUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 15106 0.76 0.198433
Target:  5'- gGCCgagGCCGCCGGCAUccucgcguGGUGCGUGCg -3'
miRNA:   3'- aUGG---CGGCGGUUGUAcu------UCAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 15170 0.66 0.680614
Target:  5'- cUGCgGCCGCCGggcGCGgUGcgccagGCGCGCg -3'
miRNA:   3'- -AUGgCGGCGGU---UGU-ACuuca--UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 15569 0.66 0.725233
Target:  5'- aUGgCGCCGUCA--GUGAcg-ACGCGCu -3'
miRNA:   3'- -AUgGCGGCGGUugUACUucaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 15765 0.7 0.459065
Target:  5'- cGuuGCCGCCAAU----GGUGCGaCGCa -3'
miRNA:   3'- aUggCGGCGGUUGuacuUCAUGC-GCG- -5'
26810 5' -53.9 NC_005808.1 + 16529 0.67 0.657958
Target:  5'- -cCCGCCccgaguucGCCGagcGCAUGGA--GCGCGCc -3'
miRNA:   3'- auGGCGG--------CGGU---UGUACUUcaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 16615 0.67 0.62381
Target:  5'- uUGgCGCCGCCGuugGUGAAgagguuGUugGUGCa -3'
miRNA:   3'- -AUgGCGGCGGUug-UACUU------CAugCGCG- -5'
26810 5' -53.9 NC_005808.1 + 16841 0.72 0.345428
Target:  5'- uUGCCGCCGcCCAGCA------GCGCGCc -3'
miRNA:   3'- -AUGGCGGC-GGUUGUacuucaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 16868 0.68 0.601065
Target:  5'- gUGCUGCCGCCG--GUGAGG-ACGaCGa -3'
miRNA:   3'- -AUGGCGGCGGUugUACUUCaUGC-GCg -5'
26810 5' -53.9 NC_005808.1 + 17203 0.7 0.448836
Target:  5'- cGCCGCCGCCGAag-GAGcGUugcaggACGCGg -3'
miRNA:   3'- aUGGCGGCGGUUguaCUU-CA------UGCGCg -5'
26810 5' -53.9 NC_005808.1 + 17444 0.69 0.544865
Target:  5'- gGCC-CCGCCAGCAUcGAGGccAgGUGCc -3'
miRNA:   3'- aUGGcGGCGGUUGUA-CUUCa-UgCGCG- -5'
26810 5' -53.9 NC_005808.1 + 17782 0.68 0.601065
Target:  5'- -gUCGCgCGCgAACGgauaGAAGcGCGCGCa -3'
miRNA:   3'- auGGCG-GCGgUUGUa---CUUCaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 18046 0.66 0.714196
Target:  5'- gGCUGCUuggggGCCuuaccGGCGcGggGUGCGUGCu -3'
miRNA:   3'- aUGGCGG-----CGG-----UUGUaCuuCAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 18548 0.67 0.622671
Target:  5'- gGCCGaaGUCGAUcacgucgGUGGAGgcCGCGCu -3'
miRNA:   3'- aUGGCggCGGUUG-------UACUUCauGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 18685 0.68 0.578434
Target:  5'- cGCCuaUGCCGGCAUgGAAGccGCGgGCg -3'
miRNA:   3'- aUGGcgGCGGUUGUA-CUUCa-UGCgCG- -5'
26810 5' -53.9 NC_005808.1 + 18846 0.69 0.501159
Target:  5'- gGCCcgguGgCGCCGGCAUGgcGcugcUGCGCGCc -3'
miRNA:   3'- aUGG----CgGCGGUUGUACuuC----AUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 18959 0.66 0.725233
Target:  5'- cUGCCGCCGCCGGC------UAC-CGCg -3'
miRNA:   3'- -AUGGCGGCGGUUGuacuucAUGcGCG- -5'
26810 5' -53.9 NC_005808.1 + 19049 0.68 0.601065
Target:  5'- gGCCGCCGgCGGCGUcGAucaGCGUGUc -3'
miRNA:   3'- aUGGCGGCgGUUGUA-CUucaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 19079 0.68 0.58973
Target:  5'- --gCGCCGCCug---GAAG-GCGCGCu -3'
miRNA:   3'- augGCGGCGGuuguaCUUCaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 19134 0.66 0.669305
Target:  5'- cACCuGUuccaCGCCGGCGU---GUACGCGCg -3'
miRNA:   3'- aUGG-CG----GCGGUUGUAcuuCAUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.