miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26810 5' -53.9 NC_005808.1 + 38569 0.66 0.703072
Target:  5'- cGCCGCgGCCGGCuuUGAAGccuauCGCu- -3'
miRNA:   3'- aUGGCGgCGGUUGu-ACUUCau---GCGcg -5'
26810 5' -53.9 NC_005808.1 + 34857 0.66 0.673833
Target:  5'- -uUCGUCGCCAACAgcaagccggccgccGAGcGUGCGCuGCa -3'
miRNA:   3'- auGGCGGCGGUUGUa-------------CUU-CAUGCG-CG- -5'
26810 5' -53.9 NC_005808.1 + 35014 0.66 0.668171
Target:  5'- cACCGUCGCCGACgacuucGUGGAcGUguccaagccggugGCGcCGCa -3'
miRNA:   3'- aUGGCGGCGGUUG------UACUU-CA-------------UGC-GCG- -5'
26810 5' -53.9 NC_005808.1 + 19635 0.66 0.714196
Target:  5'- gGCCGCgacaucgGCCAGCGUcGGGUugGUGg -3'
miRNA:   3'- aUGGCGg------CGGUUGUAcUUCAugCGCg -5'
26810 5' -53.9 NC_005808.1 + 40447 0.66 0.714196
Target:  5'- --aUGCCGCCAGCAaGAccauaaAGUGCcUGCa -3'
miRNA:   3'- augGCGGCGGUUGUaCU------UCAUGcGCG- -5'
26810 5' -53.9 NC_005808.1 + 19134 0.66 0.669305
Target:  5'- cACCuGUuccaCGCCGGCGU---GUACGCGCg -3'
miRNA:   3'- aUGG-CG----GCGGUUGUAcuuCAUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 32384 0.66 0.725233
Target:  5'- gGCCGCCcagcaggaaGCCAGCAccGAaaaaaAGccGCGCGCc -3'
miRNA:   3'- aUGGCGG---------CGGUUGUa-CU-----UCa-UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 15569 0.66 0.725233
Target:  5'- aUGgCGCCGUCA--GUGAcg-ACGCGCu -3'
miRNA:   3'- -AUgGCGGCGGUugUACUucaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 10543 0.66 0.703072
Target:  5'- -uCCGCCGCCAcgcGCAacGGGUAUugcuggaacaGCGCc -3'
miRNA:   3'- auGGCGGCGGU---UGUacUUCAUG----------CGCG- -5'
26810 5' -53.9 NC_005808.1 + 9228 0.67 0.635199
Target:  5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5'
26810 5' -53.9 NC_005808.1 + 32450 0.67 0.662501
Target:  5'- gACUGCCccuacgcccccuacuGCCGAgGUGggGgcggccgAUGCGCc -3'
miRNA:   3'- aUGGCGG---------------CGGUUgUACuuCa------UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 16615 0.67 0.62381
Target:  5'- uUGgCGCCGCCGuugGUGAAgagguuGUugGUGCa -3'
miRNA:   3'- -AUgGCGGCGGUug-UACUU------CAugCGCG- -5'
26810 5' -53.9 NC_005808.1 + 9132 0.67 0.635199
Target:  5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5'
26810 5' -53.9 NC_005808.1 + 9180 0.67 0.635199
Target:  5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5'
26810 5' -53.9 NC_005808.1 + 9324 0.67 0.635199
Target:  5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5'
26810 5' -53.9 NC_005808.1 + 9372 0.67 0.635199
Target:  5'- gUGCCGCgauaGCCAGCGgugGccGUGC-CGCg -3'
miRNA:   3'- -AUGGCGg---CGGUUGUa--CuuCAUGcGCG- -5'
26810 5' -53.9 NC_005808.1 + 1057 0.67 0.612428
Target:  5'- -gUCGCCGCgAACcgGcguccAGUaACGCGCg -3'
miRNA:   3'- auGGCGGCGgUUGuaCu----UCA-UGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 42287 0.67 0.612428
Target:  5'- gUACgGCaCGCCcugGACG-GAAGaGCGCGCc -3'
miRNA:   3'- -AUGgCG-GCGG---UUGUaCUUCaUGCGCG- -5'
26810 5' -53.9 NC_005808.1 + 37075 0.67 0.612428
Target:  5'- aGCUGCCgGCCuggaacuaccaaGGCAccGAGUugGCGCu -3'
miRNA:   3'- aUGGCGG-CGG------------UUGUacUUCAugCGCG- -5'
26810 5' -53.9 NC_005808.1 + 18548 0.67 0.622671
Target:  5'- gGCCGaaGUCGAUcacgucgGUGGAGgcCGCGCu -3'
miRNA:   3'- aUGGCggCGGUUG-------UACUUCauGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.