miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26811 3' -53.6 NC_005808.1 + 41943 1.09 0.000931
Target:  5'- cAGAAACACCAAAAGCCCCCGCCUGACc -3'
miRNA:   3'- -UCUUUGUGGUUUUCGGGGGCGGACUG- -5'
26811 3' -53.6 NC_005808.1 + 41333 0.68 0.56787
Target:  5'- cGGGAAUACC---GGCgCUCGCCgGACg -3'
miRNA:   3'- -UCUUUGUGGuuuUCGgGGGCGGaCUG- -5'
26811 3' -53.6 NC_005808.1 + 39185 0.72 0.371054
Target:  5'- uAGcgGgGCCGAAAGgCCCCGCCaaGGCa -3'
miRNA:   3'- -UCuuUgUGGUUUUCgGGGGCGGa-CUG- -5'
26811 3' -53.6 NC_005808.1 + 38141 0.71 0.399038
Target:  5'- aAGGAACuggaAGAAGCCgCaCGCCUGGCg -3'
miRNA:   3'- -UCUUUGugg-UUUUCGGgG-GCGGACUG- -5'
26811 3' -53.6 NC_005808.1 + 38005 0.69 0.534217
Target:  5'- --cGAgGCCGAGcAGUUCCuCGCCUGGCg -3'
miRNA:   3'- ucuUUgUGGUUU-UCGGGG-GCGGACUG- -5'
26811 3' -53.6 NC_005808.1 + 37049 0.68 0.553211
Target:  5'- cGAAGCcaugcgcgugauugACCAGAAGCUgCCGgCCUGGa -3'
miRNA:   3'- uCUUUG--------------UGGUUUUCGGgGGC-GGACUg -5'
26811 3' -53.6 NC_005808.1 + 36204 0.7 0.479854
Target:  5'- cGAcuACACCGGGccggccGGCCUgCGCCUGAUu -3'
miRNA:   3'- uCUu-UGUGGUUU------UCGGGgGCGGACUG- -5'
26811 3' -53.6 NC_005808.1 + 35788 0.67 0.647919
Target:  5'- cGAAacccGCGCCGu--GUCCCUGgCUGACc -3'
miRNA:   3'- uCUU----UGUGGUuuuCGGGGGCgGACUG- -5'
26811 3' -53.6 NC_005808.1 + 35214 0.66 0.727137
Target:  5'- uGGAAGguCGCCGc-GGUgCCCGCCgcugGACg -3'
miRNA:   3'- -UCUUU--GUGGUuuUCGgGGGCGGa---CUG- -5'
26811 3' -53.6 NC_005808.1 + 35088 0.66 0.727137
Target:  5'- -cGGACGCCGAAAGCgCgCGCCg--- -3'
miRNA:   3'- ucUUUGUGGUUUUCGgGgGCGGacug -5'
26811 3' -53.6 NC_005808.1 + 34613 0.7 0.448561
Target:  5'- --cGACGCCGugguGCUgCUGCCUGACg -3'
miRNA:   3'- ucuUUGUGGUuuu-CGGgGGCGGACUG- -5'
26811 3' -53.6 NC_005808.1 + 31685 0.68 0.602031
Target:  5'- -cAAGCACCAGuaacuGCUgcagcaCCGCCUGACc -3'
miRNA:   3'- ucUUUGUGGUUuu---CGGg-----GGCGGACUG- -5'
26811 3' -53.6 NC_005808.1 + 31378 0.66 0.682207
Target:  5'- cGGAAGCugCucAAGGCguugaaCCCCGaCUGGCa -3'
miRNA:   3'- -UCUUUGugGu-UUUCG------GGGGCgGACUG- -5'
26811 3' -53.6 NC_005808.1 + 31181 0.66 0.716026
Target:  5'- uGAAGCAC---GGGCCgcgcacguUCUGCCUGACg -3'
miRNA:   3'- uCUUUGUGguuUUCGG--------GGGCGGACUG- -5'
26811 3' -53.6 NC_005808.1 + 30122 0.67 0.647919
Target:  5'- uGAGgccGCGCCAGAAcacGCCgCCgGCCUGcACc -3'
miRNA:   3'- uCUU---UGUGGUUUU---CGG-GGgCGGAC-UG- -5'
26811 3' -53.6 NC_005808.1 + 29270 0.66 0.670814
Target:  5'- cGGcGACcuGCCGAAAGCCUacgCCGCCU-ACa -3'
miRNA:   3'- -UCuUUG--UGGUUUUCGGG---GGCGGAcUG- -5'
26811 3' -53.6 NC_005808.1 + 28381 0.68 0.556584
Target:  5'- ---cGCGCCAagGAAGCCgCgcugCGCCUGACc -3'
miRNA:   3'- ucuuUGUGGU--UUUCGGgG----GCGGACUG- -5'
26811 3' -53.6 NC_005808.1 + 28228 0.7 0.458868
Target:  5'- cGcgGCGCgGAu-GCCCCCGCCUuccagGACa -3'
miRNA:   3'- uCuuUGUGgUUuuCGGGGGCGGA-----CUG- -5'
26811 3' -53.6 NC_005808.1 + 25377 0.66 0.727137
Target:  5'- gGGcAGGCGCCAGAAGCCCUuuUGCgaGu- -3'
miRNA:   3'- -UC-UUUGUGGUUUUCGGGG--GCGgaCug -5'
26811 3' -53.6 NC_005808.1 + 24551 0.66 0.693549
Target:  5'- ---cGCGCCGguAAGGCCCCCaagcagcccGCC-GACa -3'
miRNA:   3'- ucuuUGUGGU--UUUCGGGGG---------CGGaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.