miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26812 5' -59.5 NC_005808.1 + 1880 0.66 0.412478
Target:  5'- cGUgGCcgGCGCUGGCCGgGUgggCGAacagcagCGGg -3'
miRNA:   3'- -CAgCG--CGCGACCGGCgCGa--GUUa------GCC- -5'
26812 5' -59.5 NC_005808.1 + 9068 0.66 0.403308
Target:  5'- uUCGCcaGCGgUGGCCGUGCcgCGAUagccagCGGu -3'
miRNA:   3'- cAGCG--CGCgACCGGCGCGa-GUUA------GCC- -5'
26812 5' -59.5 NC_005808.1 + 9020 0.66 0.403308
Target:  5'- uUCGCcaGCGgUGGCCGUGCcgCGAUagccagCGGu -3'
miRNA:   3'- cAGCG--CGCgACCGGCGCGa-GUUA------GCC- -5'
26812 5' -59.5 NC_005808.1 + 4397 0.66 0.440742
Target:  5'- cGUCGCGC-CgGGCCuugaGCGUgcggCAGUCGu -3'
miRNA:   3'- -CAGCGCGcGaCCGG----CGCGa---GUUAGCc -5'
26812 5' -59.5 NC_005808.1 + 29129 0.66 0.440742
Target:  5'- -aCGCGCGCgaGGCCGCauucCUCugccAUCGc -3'
miRNA:   3'- caGCGCGCGa-CCGGCGc---GAGu---UAGCc -5'
26812 5' -59.5 NC_005808.1 + 27825 0.66 0.435001
Target:  5'- -gCGCGCGCUgcccgcgguggcgccGGCCGCGCcgcugcUCAAgaaCGu -3'
miRNA:   3'- caGCGCGCGA---------------CCGGCGCG------AGUUa--GCc -5'
26812 5' -59.5 NC_005808.1 + 26049 0.66 0.431198
Target:  5'- -cCGCGCgGCgGGCgcgcuccaUGCGCUCGGcgaacUCGGg -3'
miRNA:   3'- caGCGCG-CGaCCG--------GCGCGAGUU-----AGCC- -5'
26812 5' -59.5 NC_005808.1 + 41218 0.66 0.412478
Target:  5'- cGUUGUGCGCgUGGCCGCGgCgcccuauGUCa- -3'
miRNA:   3'- -CAGCGCGCG-ACCGGCGC-Gagu----UAGcc -5'
26812 5' -59.5 NC_005808.1 + 22856 0.66 0.403308
Target:  5'- -gCGCGCGCUgcgaauugGGCUGCuucugGUUCGcgCGGu -3'
miRNA:   3'- caGCGCGCGA--------CCGGCG-----CGAGUuaGCC- -5'
26812 5' -59.5 NC_005808.1 + 2587 0.66 0.440742
Target:  5'- -gCGCGCGCUuGCCGCccuGUUgCAAcCGGa -3'
miRNA:   3'- caGCGCGCGAcCGGCG---CGA-GUUaGCC- -5'
26812 5' -59.5 NC_005808.1 + 995 0.66 0.431198
Target:  5'- cGUCGCcCGCUGcCCGCGC-CAcuggcCGGg -3'
miRNA:   3'- -CAGCGcGCGACcGGCGCGaGUua---GCC- -5'
26812 5' -59.5 NC_005808.1 + 18450 0.66 0.403308
Target:  5'- cGUCGagGCGCUgGGCCagGCGCgCAGcCGGc -3'
miRNA:   3'- -CAGCg-CGCGA-CCGG--CGCGaGUUaGCC- -5'
26812 5' -59.5 NC_005808.1 + 42149 0.66 0.421775
Target:  5'- -cCGCaaGCUGGCCGCGCagCAGc--- -3'
miRNA:   3'- caGCGcgCGACCGGCGCGa-GUUagcc -5'
26812 5' -59.5 NC_005808.1 + 34225 0.66 0.421775
Target:  5'- --aGCGCGa-GGCCGgGUUCGAgcCGGa -3'
miRNA:   3'- cagCGCGCgaCCGGCgCGAGUUa-GCC- -5'
26812 5' -59.5 NC_005808.1 + 35504 0.66 0.403308
Target:  5'- aUCGUGCGCgUGGgCGCGC-CG--UGGg -3'
miRNA:   3'- cAGCGCGCG-ACCgGCGCGaGUuaGCC- -5'
26812 5' -59.5 NC_005808.1 + 20628 0.67 0.388909
Target:  5'- gGUCG-GUGUcGGCCuGCGCUCGuuccuguccccgaauAUCGGu -3'
miRNA:   3'- -CAGCgCGCGaCCGG-CGCGAGU---------------UAGCC- -5'
26812 5' -59.5 NC_005808.1 + 19887 0.67 0.385362
Target:  5'- cGUCGCGCGCcuucuUGGCCGUGg-CAa--GGu -3'
miRNA:   3'- -CAGCGCGCG-----ACCGGCGCgaGUuagCC- -5'
26812 5' -59.5 NC_005808.1 + 10736 0.67 0.376588
Target:  5'- cGUCGCcuuGCuGCUcgccaaGGgCGCGCUCGAcuUCGGc -3'
miRNA:   3'- -CAGCG---CG-CGA------CCgGCGCGAGUU--AGCC- -5'
26812 5' -59.5 NC_005808.1 + 1670 0.67 0.385362
Target:  5'- uUUGCGCGUgaugcuGCCGCGCaggUAGUCGa -3'
miRNA:   3'- cAGCGCGCGac----CGGCGCGa--GUUAGCc -5'
26812 5' -59.5 NC_005808.1 + 13582 0.67 0.394269
Target:  5'- -aCGCGCGCUcGCCauCGCUCAccUGGa -3'
miRNA:   3'- caGCGCGCGAcCGGc-GCGAGUuaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.