miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26812 5' -59.5 NC_005808.1 + 28282 0.69 0.29211
Target:  5'- -cCGCGCGCUGGgacacggcgcagaacUugaagaacucggCGCGCUCGgcGUCGGa -3'
miRNA:   3'- caGCGCGCGACC---------------G------------GCGCGAGU--UAGCC- -5'
26812 5' -59.5 NC_005808.1 + 30266 0.71 0.191665
Target:  5'- --aGCuGCGCUGGUCGCGCgagUCGccggaaaacGUCGGg -3'
miRNA:   3'- cagCG-CGCGACCGGCGCG---AGU---------UAGCC- -5'
26812 5' -59.5 NC_005808.1 + 12902 0.71 0.191665
Target:  5'- cGUCGCcuuuggcgauGCGCUcGGCCGCGCccauaacgcuagUCAGcuucUCGGg -3'
miRNA:   3'- -CAGCG----------CGCGA-CCGGCGCG------------AGUU----AGCC- -5'
26812 5' -59.5 NC_005808.1 + 36500 0.71 0.207454
Target:  5'- cGUUGCgacauGCGCaaGGCCGCGCUCGA-CGa -3'
miRNA:   3'- -CAGCG-----CGCGa-CCGGCGCGAGUUaGCc -5'
26812 5' -59.5 NC_005808.1 + 26340 0.71 0.212961
Target:  5'- -cCGCGaaCUGGCCGCGCcgcUCGuAUCGGc -3'
miRNA:   3'- caGCGCgcGACCGGCGCG---AGU-UAGCC- -5'
26812 5' -59.5 NC_005808.1 + 24146 0.7 0.236259
Target:  5'- -cUGCGCGcCUGGCCcaGCGcCUCGA-CGGc -3'
miRNA:   3'- caGCGCGC-GACCGG--CGC-GAGUUaGCC- -5'
26812 5' -59.5 NC_005808.1 + 7544 0.7 0.248689
Target:  5'- -cCGCaCGCUGGCuCGCGgccgggucguaCUUAAUCGGa -3'
miRNA:   3'- caGCGcGCGACCG-GCGC-----------GAGUUAGCC- -5'
26812 5' -59.5 NC_005808.1 + 1081 0.69 0.268343
Target:  5'- -aCGCGCGCgguagauugccuUGGCCGUG-UCGcgCGGc -3'
miRNA:   3'- caGCGCGCG------------ACCGGCGCgAGUuaGCC- -5'
26812 5' -59.5 NC_005808.1 + 16812 0.69 0.282129
Target:  5'- gGUCGCGCcCaGGCgGCGCaguUCAcgCGGc -3'
miRNA:   3'- -CAGCGCGcGaCCGgCGCG---AGUuaGCC- -5'
26812 5' -59.5 NC_005808.1 + 20753 0.72 0.181734
Target:  5'- -cCGUagagGCGCUGcGCCGCGCUCGAcucaUCGc -3'
miRNA:   3'- caGCG----CGCGAC-CGGCGCGAGUU----AGCc -5'
26812 5' -59.5 NC_005808.1 + 29625 0.72 0.181734
Target:  5'- -cCGgGCGCuugUGGCCGgGCUUGAUgGGg -3'
miRNA:   3'- caGCgCGCG---ACCGGCgCGAGUUAgCC- -5'
26812 5' -59.5 NC_005808.1 + 33062 0.72 0.176941
Target:  5'- uGUCGUGCGCUucaucgGGUCGCGCagCGAcgCGGc -3'
miRNA:   3'- -CAGCGCGCGA------CCGGCGCGa-GUUa-GCC- -5'
26812 5' -59.5 NC_005808.1 + 6730 0.78 0.068815
Target:  5'- -cCGCuGCGCUGggccGCCGCGCUCAAUagCGGa -3'
miRNA:   3'- caGCG-CGCGAC----CGGCGCGAGUUA--GCC- -5'
26812 5' -59.5 NC_005808.1 + 39866 0.75 0.108096
Target:  5'- --aGCaGCGCcgGGCCGCGCUCAAgcgucCGGc -3'
miRNA:   3'- cagCG-CGCGa-CCGGCGCGAGUUa----GCC- -5'
26812 5' -59.5 NC_005808.1 + 8389 0.75 0.108096
Target:  5'- -cCuCGCGCUGGCUGCGUagcCAGUCGGc -3'
miRNA:   3'- caGcGCGCGACCGGCGCGa--GUUAGCC- -5'
26812 5' -59.5 NC_005808.1 + 18563 0.74 0.120807
Target:  5'- cGUCG-GUGgaGGCCGCGCUCg--CGGu -3'
miRNA:   3'- -CAGCgCGCgaCCGGCGCGAGuuaGCC- -5'
26812 5' -59.5 NC_005808.1 + 6638 0.74 0.124196
Target:  5'- uUCGCGCGCuUGGCCggaguguccGCGCUCA--UGGu -3'
miRNA:   3'- cAGCGCGCG-ACCGG---------CGCGAGUuaGCC- -5'
26812 5' -59.5 NC_005808.1 + 27416 0.73 0.150484
Target:  5'- cGUCGCGCGcCUGGCgcacCGCGCcCGG-CGGc -3'
miRNA:   3'- -CAGCGCGC-GACCG----GCGCGaGUUaGCC- -5'
26812 5' -59.5 NC_005808.1 + 10478 0.73 0.152959
Target:  5'- aGUCGCGCaGCaccggcccgaacgGGCCGUGCUCuuGAUCGa -3'
miRNA:   3'- -CAGCGCG-CGa------------CCGGCGCGAG--UUAGCc -5'
26812 5' -59.5 NC_005808.1 + 11089 0.72 0.175996
Target:  5'- gGUCGCGCGCgagcaccuugucGGCUGCGgC-CAAUUGGu -3'
miRNA:   3'- -CAGCGCGCGa-----------CCGGCGC-GaGUUAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.