miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26812 5' -59.5 NC_005808.1 + 995 0.66 0.431198
Target:  5'- cGUCGCcCGCUGcCCGCGC-CAcuggcCGGg -3'
miRNA:   3'- -CAGCGcGCGACcGGCGCGaGUua---GCC- -5'
26812 5' -59.5 NC_005808.1 + 1081 0.69 0.268343
Target:  5'- -aCGCGCGCgguagauugccuUGGCCGUG-UCGcgCGGc -3'
miRNA:   3'- caGCGCGCG------------ACCGGCGCgAGUuaGCC- -5'
26812 5' -59.5 NC_005808.1 + 1670 0.67 0.385362
Target:  5'- uUUGCGCGUgaugcuGCCGCGCaggUAGUCGa -3'
miRNA:   3'- cAGCGCGCGac----CGGCGCGa--GUUAGCc -5'
26812 5' -59.5 NC_005808.1 + 1880 0.66 0.412478
Target:  5'- cGUgGCcgGCGCUGGCCGgGUgggCGAacagcagCGGg -3'
miRNA:   3'- -CAgCG--CGCGACCGGCgCGa--GUUa------GCC- -5'
26812 5' -59.5 NC_005808.1 + 2245 0.68 0.324483
Target:  5'- --gGCGCG-UGGCCGCGCaaugaaucuucuugUCGAUCa- -3'
miRNA:   3'- cagCGCGCgACCGGCGCG--------------AGUUAGcc -5'
26812 5' -59.5 NC_005808.1 + 2546 0.69 0.296471
Target:  5'- uUCGCG-GUaggGGCCGCGCUCGuaauugcCGGc -3'
miRNA:   3'- cAGCGCgCGa--CCGGCGCGAGUua-----GCC- -5'
26812 5' -59.5 NC_005808.1 + 2587 0.66 0.440742
Target:  5'- -gCGCGCGCUuGCCGCccuGUUgCAAcCGGa -3'
miRNA:   3'- caGCGCGCGAcCGGCG---CGA-GUUaGCC- -5'
26812 5' -59.5 NC_005808.1 + 3875 0.67 0.394269
Target:  5'- cGUCGC-UGUaGGCCGCGCUgCcGUCGc -3'
miRNA:   3'- -CAGCGcGCGaCCGGCGCGA-GuUAGCc -5'
26812 5' -59.5 NC_005808.1 + 4397 0.66 0.440742
Target:  5'- cGUCGCGC-CgGGCCuugaGCGUgcggCAGUCGu -3'
miRNA:   3'- -CAGCGCGcGaCCGG----CGCGa---GUUAGCc -5'
26812 5' -59.5 NC_005808.1 + 6638 0.74 0.124196
Target:  5'- uUCGCGCGCuUGGCCggaguguccGCGCUCA--UGGu -3'
miRNA:   3'- cAGCGCGCG-ACCGG---------CGCGAGUuaGCC- -5'
26812 5' -59.5 NC_005808.1 + 6730 0.78 0.068815
Target:  5'- -cCGCuGCGCUGggccGCCGCGCUCAAUagCGGa -3'
miRNA:   3'- caGCG-CGCGAC----CGGCGCGAGUUA--GCC- -5'
26812 5' -59.5 NC_005808.1 + 7535 0.72 0.176941
Target:  5'- -cCGUGCGCUcGGCggCGUGCUCGAUCu- -3'
miRNA:   3'- caGCGCGCGA-CCG--GCGCGAGUUAGcc -5'
26812 5' -59.5 NC_005808.1 + 7544 0.7 0.248689
Target:  5'- -cCGCaCGCUGGCuCGCGgccgggucguaCUUAAUCGGa -3'
miRNA:   3'- caGCGcGCGACCG-GCGC-----------GAGUUAGCC- -5'
26812 5' -59.5 NC_005808.1 + 8225 0.74 0.127672
Target:  5'- uUCGUGCGC-GGCCGUGCcCucGUCGGc -3'
miRNA:   3'- cAGCGCGCGaCCGGCGCGaGu-UAGCC- -5'
26812 5' -59.5 NC_005808.1 + 8389 0.75 0.108096
Target:  5'- -cCuCGCGCUGGCUGCGUagcCAGUCGGc -3'
miRNA:   3'- caGcGCGCGACCGGCGCGa--GUUAGCC- -5'
26812 5' -59.5 NC_005808.1 + 8979 0.69 0.268343
Target:  5'- uUCGCaGCGgUGGCCGUGCcgcCAG-CGGu -3'
miRNA:   3'- cAGCG-CGCgACCGGCGCGa--GUUaGCC- -5'
26812 5' -59.5 NC_005808.1 + 9020 0.66 0.403308
Target:  5'- uUCGCcaGCGgUGGCCGUGCcgCGAUagccagCGGu -3'
miRNA:   3'- cAGCG--CGCgACCGGCGCGa-GUUA------GCC- -5'
26812 5' -59.5 NC_005808.1 + 9068 0.66 0.403308
Target:  5'- uUCGCcaGCGgUGGCCGUGCcgCGAUagccagCGGu -3'
miRNA:   3'- cAGCG--CGCgACCGGCGCGa-GUUA------GCC- -5'
26812 5' -59.5 NC_005808.1 + 10478 0.73 0.152959
Target:  5'- aGUCGCGCaGCaccggcccgaacgGGCCGUGCUCuuGAUCGa -3'
miRNA:   3'- -CAGCGCG-CGa------------CCGGCGCGAG--UUAGCc -5'
26812 5' -59.5 NC_005808.1 + 10736 0.67 0.376588
Target:  5'- cGUCGCcuuGCuGCUcgccaaGGgCGCGCUCGAcuUCGGc -3'
miRNA:   3'- -CAGCG---CG-CGA------CCgGCGCGAGUU--AGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.