miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26813 3' -52.4 NC_005808.1 + 42377 1.07 0.001479
Target:  5'- cUACAACAUGCGGCAUACCUACGCCACc -3'
miRNA:   3'- -AUGUUGUACGCCGUAUGGAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 15140 0.77 0.205025
Target:  5'- cGCGGCGcGCuGGCAUACCaGCGCCAg -3'
miRNA:   3'- aUGUUGUaCG-CCGUAUGGaUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 23747 0.76 0.235762
Target:  5'- cGCAGCA-GCGcCAUGCCgGCGCCACc -3'
miRNA:   3'- aUGUUGUaCGCcGUAUGGaUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 29259 0.75 0.26306
Target:  5'- cGCGACuucgGCGGCGaccugccgaaaGCCUACGCCGCc -3'
miRNA:   3'- aUGUUGua--CGCCGUa----------UGGAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 14756 0.75 0.285178
Target:  5'- cUugAGCA-GCGGCGcgGCCgGCGCCACc -3'
miRNA:   3'- -AugUUGUaCGCCGUa-UGGaUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 24472 0.73 0.342417
Target:  5'- gACGACcUGCuGCuugGCCUGCGCCAg -3'
miRNA:   3'- aUGUUGuACGcCGua-UGGAUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 2426 0.73 0.360225
Target:  5'- gUACGGCA-GCaGGCcgGCCUcgaagaucgGCGCCACg -3'
miRNA:   3'- -AUGUUGUaCG-CCGuaUGGA---------UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 26460 0.73 0.360225
Target:  5'- -uCAGCGUGCGGCcgcaguCCUACGUCGg -3'
miRNA:   3'- auGUUGUACGCCGuau---GGAUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 19856 0.73 0.369367
Target:  5'- aGCAGCGUGgugaguucgGGCGUGCCgaagGCGUCGCg -3'
miRNA:   3'- aUGUUGUACg--------CCGUAUGGa---UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 26855 0.72 0.378668
Target:  5'- aACGAgGUGCGGUAUgucgagcgcaugGCCUcGCGCCAg -3'
miRNA:   3'- aUGUUgUACGCCGUA------------UGGA-UGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 34062 0.72 0.388124
Target:  5'- cGCGGC-UGuCGaGCGUuucaucGCCUACGCCACg -3'
miRNA:   3'- aUGUUGuAC-GC-CGUA------UGGAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 23262 0.71 0.42645
Target:  5'- aACAGCAUGgucagguCGGUGUcgGCgUGCGCCACg -3'
miRNA:   3'- aUGUUGUAC-------GCCGUA--UGgAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 23192 0.71 0.427462
Target:  5'- gACAGCAUGgGGaugcuggaaACCUACGCCGa -3'
miRNA:   3'- aUGUUGUACgCCgua------UGGAUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 1039 0.71 0.458466
Target:  5'- cACGGCcgGCGGCA-GCauguCGCCGCg -3'
miRNA:   3'- aUGUUGuaCGCCGUaUGgau-GCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 7537 0.71 0.469065
Target:  5'- gUGCGcUcgGCGGCGUGCUcgaucugcgGCGCCACc -3'
miRNA:   3'- -AUGUuGuaCGCCGUAUGGa--------UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 4410 0.7 0.479788
Target:  5'- cUugAGCGUGCGGCAgucguaggucgUACCcg-GCCGCa -3'
miRNA:   3'- -AugUUGUACGCCGU-----------AUGGaugCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 36131 0.7 0.490629
Target:  5'- cGCGGCGUGCaGUu--CCUGCGCgACg -3'
miRNA:   3'- aUGUUGUACGcCGuauGGAUGCGgUG- -5'
26813 3' -52.4 NC_005808.1 + 35979 0.7 0.501583
Target:  5'- cGCGAagcugGCGGCGga-CUACGCCAUg -3'
miRNA:   3'- aUGUUgua--CGCCGUaugGAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 7209 0.7 0.501583
Target:  5'- cGCGAUGUccaCGGCAgcAUCUGCGCCGCg -3'
miRNA:   3'- aUGUUGUAc--GCCGUa-UGGAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 36415 0.7 0.512643
Target:  5'- cUGCaAACGcUGCGGCAagaccgGCCUGCGCUg- -3'
miRNA:   3'- -AUG-UUGU-ACGCCGUa-----UGGAUGCGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.