miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26813 3' -52.4 NC_005808.1 + 210 0.68 0.650651
Target:  5'- aGCAuCAUgGUGGCGUAggUAUGCCGCa -3'
miRNA:   3'- aUGUuGUA-CGCCGUAUggAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 1039 0.71 0.458466
Target:  5'- cACGGCcgGCGGCA-GCauguCGCCGCg -3'
miRNA:   3'- aUGUUGuaCGCCGUaUGgau-GCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 1080 0.66 0.764073
Target:  5'- aAC-GCGcGCGGUAgauUGCCUugGCCGu -3'
miRNA:   3'- aUGuUGUaCGCCGU---AUGGAugCGGUg -5'
26813 3' -52.4 NC_005808.1 + 1747 0.66 0.742171
Target:  5'- aACAcCggGCGGuCAUggccgGCCUGCGCCugGCg -3'
miRNA:   3'- aUGUuGuaCGCC-GUA-----UGGAUGCGG--UG- -5'
26813 3' -52.4 NC_005808.1 + 2135 0.66 0.774802
Target:  5'- gUGCAGCAgcCGGUcaACC-GCGCCGCc -3'
miRNA:   3'- -AUGUUGUacGCCGuaUGGaUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 2426 0.73 0.360225
Target:  5'- gUACGGCA-GCaGGCcgGCCUcgaagaucgGCGCCACg -3'
miRNA:   3'- -AUGUUGUaCG-CCGuaUGGA---------UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 4047 0.66 0.753191
Target:  5'- cGCGGCGaGCGGCAgGCCaGCgGCC-Ca -3'
miRNA:   3'- aUGUUGUaCGCCGUaUGGaUG-CGGuG- -5'
26813 3' -52.4 NC_005808.1 + 4410 0.7 0.479788
Target:  5'- cUugAGCGUGCGGCAgucguaggucgUACCcg-GCCGCa -3'
miRNA:   3'- -AugUUGUACGCCGU-----------AUGGaugCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 5441 0.66 0.71977
Target:  5'- gGCGGCGUGggcgagguCGGUAUcgACCaucACGCCGCg -3'
miRNA:   3'- aUGUUGUAC--------GCCGUA--UGGa--UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 7209 0.7 0.501583
Target:  5'- cGCGAUGUccaCGGCAgcAUCUGCGCCGCg -3'
miRNA:   3'- aUGUUGUAc--GCCGUa-UGGAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 7537 0.71 0.469065
Target:  5'- gUGCGcUcgGCGGCGUGCUcgaucugcgGCGCCACc -3'
miRNA:   3'- -AUGUuGuaCGCCGUAUGGa--------UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 7764 0.69 0.569275
Target:  5'- uUGCAGCAc-CGGCGcgAUCUGCGCCGg -3'
miRNA:   3'- -AUGUUGUacGCCGUa-UGGAUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 8000 0.69 0.580809
Target:  5'- cACGGCGU-CGGaCGUGCCcuugGCGCCAg -3'
miRNA:   3'- aUGUUGUAcGCC-GUAUGGa---UGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 8208 0.66 0.753191
Target:  5'- aGCGACAUgGCGGCcaguuCgUGCGCgGCc -3'
miRNA:   3'- aUGUUGUA-CGCCGuau--GgAUGCGgUG- -5'
26813 3' -52.4 NC_005808.1 + 8339 0.68 0.604012
Target:  5'- uUGC-GCGUGCGuGCucaugccaGUACCUccuGCGCCGCc -3'
miRNA:   3'- -AUGuUGUACGC-CG--------UAUGGA---UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 8452 0.66 0.718638
Target:  5'- cGCGAUGU-CGGCGUcgaggugGCCUGCgauGCCGCa -3'
miRNA:   3'- aUGUUGUAcGCCGUA-------UGGAUG---CGGUG- -5'
26813 3' -52.4 NC_005808.1 + 8778 0.66 0.728783
Target:  5'- gGCAGCAcGCGGCGcacgaugggucgGCC-GCGCCGg -3'
miRNA:   3'- aUGUUGUaCGCCGUa-----------UGGaUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 9400 0.66 0.774802
Target:  5'- cGCGAUAgccaGCGGUggccGUGCCgaggGCGcCCACu -3'
miRNA:   3'- aUGUUGUa---CGCCG----UAUGGa---UGC-GGUG- -5'
26813 3' -52.4 NC_005808.1 + 10959 0.68 0.650651
Target:  5'- aGCGGCA--CGGUAUGCCUugagcccUGCCACg -3'
miRNA:   3'- aUGUUGUacGCCGUAUGGAu------GCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 11130 0.68 0.63899
Target:  5'- --aAACGUGCGaGCAguucgGCCUGCugcuggGCCGCc -3'
miRNA:   3'- augUUGUACGC-CGUa----UGGAUG------CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.