miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26813 3' -52.4 NC_005808.1 + 42445 0.66 0.753191
Target:  5'- cGCAuccGCcUGCGGgGaaGCCUgGCGCCACg -3'
miRNA:   3'- aUGU---UGuACGCCgUa-UGGA-UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 42377 1.07 0.001479
Target:  5'- cUACAACAUGCGGCAUACCUACGCCACc -3'
miRNA:   3'- -AUGUUGUACGCCGUAUGGAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 42261 0.66 0.774802
Target:  5'- gGCGagcACGUGUGGCAcgACCcccggUACGgCACg -3'
miRNA:   3'- aUGU---UGUACGCCGUa-UGG-----AUGCgGUG- -5'
26813 3' -52.4 NC_005808.1 + 40011 0.69 0.546388
Target:  5'- uUGCAACAggGCGGCAaGCgcGCGCaCGCg -3'
miRNA:   3'- -AUGUUGUa-CGCCGUaUGgaUGCG-GUG- -5'
26813 3' -52.4 NC_005808.1 + 37452 0.67 0.696978
Target:  5'- aGCAGCGa-CGGCc-GCCUGCGCgGCa -3'
miRNA:   3'- aUGUUGUacGCCGuaUGGAUGCGgUG- -5'
26813 3' -52.4 NC_005808.1 + 37340 0.68 0.627322
Target:  5'- -uCAACAcgGUGGCcgGUGCCaACGCCAa -3'
miRNA:   3'- auGUUGUa-CGCCG--UAUGGaUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 37244 0.68 0.615659
Target:  5'- cGCGguGCAgGCGGCcacgcagcgcgAUGCCaugcUGCGCCACg -3'
miRNA:   3'- aUGU--UGUaCGCCG-----------UAUGG----AUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 37137 0.67 0.704993
Target:  5'- aACGACc-GCGGCGUgauggucgauaccgACCUcgcccACGCCGCc -3'
miRNA:   3'- aUGUUGuaCGCCGUA--------------UGGA-----UGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 36701 0.67 0.662293
Target:  5'- gGCGGCAcacucaccacGCuGGCG-ACCUAUGCCACu -3'
miRNA:   3'- aUGUUGUa---------CG-CCGUaUGGAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 36415 0.7 0.512643
Target:  5'- cUGCaAACGcUGCGGCAagaccgGCCUGCGCUg- -3'
miRNA:   3'- -AUG-UUGU-ACGCCGUa-----UGGAUGCGGug -5'
26813 3' -52.4 NC_005808.1 + 36202 0.7 0.523802
Target:  5'- cGCGACuacaccggGcCGGCcgGCCUGCGCCu- -3'
miRNA:   3'- aUGUUGua------C-GCCGuaUGGAUGCGGug -5'
26813 3' -52.4 NC_005808.1 + 36131 0.7 0.490629
Target:  5'- cGCGGCGUGCaGUu--CCUGCGCgACg -3'
miRNA:   3'- aUGUUGUACGcCGuauGGAUGCGgUG- -5'
26813 3' -52.4 NC_005808.1 + 35979 0.7 0.501583
Target:  5'- cGCGAagcugGCGGCGga-CUACGCCAUg -3'
miRNA:   3'- aUGUUgua--CGCCGUaugGAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 34329 0.67 0.673903
Target:  5'- gAUAGCGUGCGuCAgaucgaacACCUGgGCCGCu -3'
miRNA:   3'- aUGUUGUACGCcGUa-------UGGAUgCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 34130 0.66 0.731026
Target:  5'- -uCGGC-UGCGGCAUcgcaggccACCUcgACGCCGa -3'
miRNA:   3'- auGUUGuACGCCGUA--------UGGA--UGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 34062 0.72 0.388124
Target:  5'- cGCGGC-UGuCGaGCGUuucaucGCCUACGCCACg -3'
miRNA:   3'- aUGUUGuAC-GC-CGUA------UGGAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 33983 0.66 0.774802
Target:  5'- aAgGGCGUacCGGCcacGCCUACGCCAUc -3'
miRNA:   3'- aUgUUGUAc-GCCGua-UGGAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 33902 0.66 0.753191
Target:  5'- gGCAGCAaucugcGCGGCGcacACCUGgGCgCGCa -3'
miRNA:   3'- aUGUUGUa-----CGCCGUa--UGGAUgCG-GUG- -5'
26813 3' -52.4 NC_005808.1 + 33810 0.67 0.708416
Target:  5'- -cCGGC--GCGGCcgACCcaucgUGCGCCGCg -3'
miRNA:   3'- auGUUGuaCGCCGuaUGG-----AUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 32902 0.67 0.696978
Target:  5'- gACAACAagaacUGCGGCcacgGCCUGCacgGCgGCu -3'
miRNA:   3'- aUGUUGU-----ACGCCGua--UGGAUG---CGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.