miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26813 3' -52.4 NC_005808.1 + 15140 0.77 0.205025
Target:  5'- cGCGGCGcGCuGGCAUACCaGCGCCAg -3'
miRNA:   3'- aUGUUGUaCG-CCGUAUGGaUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 210 0.68 0.650651
Target:  5'- aGCAuCAUgGUGGCGUAggUAUGCCGCa -3'
miRNA:   3'- aUGUuGUA-CGCCGUAUggAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 34329 0.67 0.673903
Target:  5'- gAUAGCGUGCGuCAgaucgaacACCUGgGCCGCu -3'
miRNA:   3'- aUGUUGUACGCcGUa-------UGGAUgCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 9400 0.66 0.774802
Target:  5'- cGCGAUAgccaGCGGUggccGUGCCgaggGCGcCCACu -3'
miRNA:   3'- aUGUUGUa---CGCCG----UAUGGa---UGC-GGUG- -5'
26813 3' -52.4 NC_005808.1 + 26855 0.72 0.378668
Target:  5'- aACGAgGUGCGGUAUgucgagcgcaugGCCUcGCGCCAg -3'
miRNA:   3'- aUGUUgUACGCCGUA------------UGGA-UGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 23192 0.71 0.427462
Target:  5'- gACAGCAUGgGGaugcuggaaACCUACGCCGa -3'
miRNA:   3'- aUGUUGUACgCCgua------UGGAUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 4410 0.7 0.479788
Target:  5'- cUugAGCGUGCGGCAgucguaggucgUACCcg-GCCGCa -3'
miRNA:   3'- -AugUUGUACGCCGU-----------AUGGaugCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 35979 0.7 0.501583
Target:  5'- cGCGAagcugGCGGCGga-CUACGCCAUg -3'
miRNA:   3'- aUGUUgua--CGCCGUaugGAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 8000 0.69 0.580809
Target:  5'- cACGGCGU-CGGaCGUGCCcuugGCGCCAg -3'
miRNA:   3'- aUGUUGUAcGCC-GUAUGGa---UGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 10959 0.68 0.650651
Target:  5'- aGCGGCA--CGGUAUGCCUugagcccUGCCACg -3'
miRNA:   3'- aUGUUGUacGCCGUAUGGAu------GCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 37340 0.68 0.627322
Target:  5'- -uCAACAcgGUGGCcgGUGCCaACGCCAa -3'
miRNA:   3'- auGUUGUa-CGCCG--UAUGGaUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 29397 0.7 0.535053
Target:  5'- aAgAACAUGCaGGCGUACa-ACGCCGg -3'
miRNA:   3'- aUgUUGUACG-CCGUAUGgaUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 29259 0.75 0.26306
Target:  5'- cGCGACuucgGCGGCGaccugccgaaaGCCUACGCCGCc -3'
miRNA:   3'- aUGUUGua--CGCCGUa----------UGGAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 27749 0.68 0.63899
Target:  5'- -cCAGCGUGCGGC--GCUggcCGCCAa -3'
miRNA:   3'- auGUUGUACGCCGuaUGGau-GCGGUg -5'
26813 3' -52.4 NC_005808.1 + 14756 0.75 0.285178
Target:  5'- cUugAGCA-GCGGCGcgGCCgGCGCCACc -3'
miRNA:   3'- -AugUUGUaCGCCGUa-UGGaUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 36202 0.7 0.523802
Target:  5'- cGCGACuacaccggGcCGGCcgGCCUGCGCCu- -3'
miRNA:   3'- aUGUUGua------C-GCCGuaUGGAUGCGGug -5'
26813 3' -52.4 NC_005808.1 + 14519 0.68 0.63899
Target:  5'- aUACGACGccGCGGCc-ACCUGC-CCGCu -3'
miRNA:   3'- -AUGUUGUa-CGCCGuaUGGAUGcGGUG- -5'
26813 3' -52.4 NC_005808.1 + 36701 0.67 0.662293
Target:  5'- gGCGGCAcacucaccacGCuGGCG-ACCUAUGCCACu -3'
miRNA:   3'- aUGUUGUa---------CG-CCGUaUGGAUGCGGUG- -5'
26813 3' -52.4 NC_005808.1 + 26460 0.73 0.360225
Target:  5'- -uCAGCGUGCGGCcgcaguCCUACGUCGg -3'
miRNA:   3'- auGUUGUACGCCGuau---GGAUGCGGUg -5'
26813 3' -52.4 NC_005808.1 + 7537 0.71 0.469065
Target:  5'- gUGCGcUcgGCGGCGUGCUcgaucugcgGCGCCACc -3'
miRNA:   3'- -AUGUuGuaCGCCGUAUGGa--------UGCGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.