miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26814 3' -68.1 NC_005809.1 + 28243 0.66 0.175628
Target:  5'- -aGCaGGCCCGGCaguucagccaaGGCGCgCGCCa--- -3'
miRNA:   3'- ccCG-CCGGGCCGg----------CCGCG-GCGGcauc -5'
26814 3' -68.1 NC_005809.1 + 32913 0.66 0.175628
Target:  5'- -uGCGGCCaCGGCCuGCacgGCUGCUGUu- -3'
miRNA:   3'- ccCGCCGG-GCCGGcCG---CGGCGGCAuc -5'
26814 3' -68.1 NC_005809.1 + 9210 0.66 0.175628
Target:  5'- cGGCGGCgCGGCgcacguucugCGGCGCgC-CCGgcGg -3'
miRNA:   3'- cCCGCCGgGCCG----------GCCGCG-GcGGCauC- -5'
26814 3' -68.1 NC_005809.1 + 27692 0.66 0.171245
Target:  5'- uGGaauacaGGCCgCGcGCCGGCagcggcucGCCGCCGg-- -3'
miRNA:   3'- cCCg-----CCGG-GC-CGGCCG--------CGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 40435 0.66 0.16696
Target:  5'- cGGCGGCgCGGuugaCCGGCuGCUGCaCGa-- -3'
miRNA:   3'- cCCGCCGgGCC----GGCCG-CGGCG-GCauc -5'
26814 3' -68.1 NC_005809.1 + 22490 0.66 0.16696
Target:  5'- gGGGCgGGCUgGGCUGGUcauGCCcGCCa--- -3'
miRNA:   3'- -CCCG-CCGGgCCGGCCG---CGG-CGGcauc -5'
26814 3' -68.1 NC_005809.1 + 29088 0.66 0.16696
Target:  5'- cGGGCgccgaggucaGGCCCGuGCgGGacuuGCUGCCGg-- -3'
miRNA:   3'- -CCCG----------CCGGGC-CGgCCg---CGGCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 25630 0.66 0.162771
Target:  5'- cGGCGGCaCGcuGCUGGaCGgCGCCGUGc -3'
miRNA:   3'- cCCGCCGgGC--CGGCC-GCgGCGGCAUc -5'
26814 3' -68.1 NC_005809.1 + 38994 0.66 0.162771
Target:  5'- uGGCGGCCgCGGaUCGGUGUaCGCCc--- -3'
miRNA:   3'- cCCGCCGG-GCC-GGCCGCG-GCGGcauc -5'
26814 3' -68.1 NC_005809.1 + 37056 0.66 0.161533
Target:  5'- uGGGCGG-CCGGCguguccuacgacuuUGGCaGCauCGCCGUAc -3'
miRNA:   3'- -CCCGCCgGGCCG--------------GCCG-CG--GCGGCAUc -5'
26814 3' -68.1 NC_005809.1 + 30728 0.66 0.158677
Target:  5'- gGGGUucGCCCaGGCCaaccgcGGCGCgGCCGg-- -3'
miRNA:   3'- -CCCGc-CGGG-CCGG------CCGCGgCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 28672 0.66 0.158677
Target:  5'- cGGCGGCCUcGCCaGCGCgGCgCGc-- -3'
miRNA:   3'- cCCGCCGGGcCGGcCGCGgCG-GCauc -5'
26814 3' -68.1 NC_005809.1 + 16067 0.66 0.158677
Target:  5'- -cGUGGCC--GCCGcGCGCggCGCCGUAGa -3'
miRNA:   3'- ccCGCCGGgcCGGC-CGCG--GCGGCAUC- -5'
26814 3' -68.1 NC_005809.1 + 25308 0.66 0.158677
Target:  5'- cGGcCGGCCCuGCCaccGGCGCucguCGCCGg-- -3'
miRNA:   3'- cCC-GCCGGGcCGG---CCGCG----GCGGCauc -5'
26814 3' -68.1 NC_005809.1 + 30985 0.66 0.154676
Target:  5'- cGGCGGCCa-GCCGGCgGCC-CUGg-- -3'
miRNA:   3'- cCCGCCGGgcCGGCCG-CGGcGGCauc -5'
26814 3' -68.1 NC_005809.1 + 13236 0.66 0.154676
Target:  5'- uGGUucgaGGaCuuGGCCGGCGaCCGCCa--- -3'
miRNA:   3'- cCCG----CC-GggCCGGCCGC-GGCGGcauc -5'
26814 3' -68.1 NC_005809.1 + 33186 0.66 0.154676
Target:  5'- uGGGCGcCCuCGGCaCGGCcaCCGCUGgcGa -3'
miRNA:   3'- -CCCGCcGG-GCCG-GCCGc-GGCGGCauC- -5'
26814 3' -68.1 NC_005809.1 + 3746 0.66 0.154676
Target:  5'- uGGUGGgCaC-GUCGGUGCCGCCGcUGGa -3'
miRNA:   3'- cCCGCCgG-GcCGGCCGCGGCGGC-AUC- -5'
26814 3' -68.1 NC_005809.1 + 31877 0.67 0.146947
Target:  5'- --uCGGCCgaGGCCGugcGCGCUGCCGUcaAGa -3'
miRNA:   3'- cccGCCGGg-CCGGC---CGCGGCGGCA--UC- -5'
26814 3' -68.1 NC_005809.1 + 23739 0.67 0.146947
Target:  5'- cGGUGGCgCGcagcagcgccauGCCGGCGCCaCCGg-- -3'
miRNA:   3'- cCCGCCGgGC------------CGGCCGCGGcGGCauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.